Oven007077.1
Basic Information
- Insect
- Ophion ventricosus
- Gene Symbol
- -
- Assembly
- GCA_963932345.1
- Location
- OZ010715.1:20779174-20783493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00078 0.07 13.8 1.5 2 23 64 85 63 85 0.96 2 18 0.0002 0.017 15.7 0.8 3 23 91 111 90 111 0.98 3 18 0.23 20 6.1 0.5 3 23 118 138 117 138 0.96 4 18 4.1e-05 0.0037 17.8 0.1 3 23 146 166 145 166 0.98 5 18 0.18 16 6.3 4.8 1 23 175 197 175 197 0.98 6 18 0.23 20 6.1 0.1 2 23 204 224 203 224 0.86 7 18 0.0096 0.86 10.4 0.3 3 18 232 247 231 247 0.94 8 18 3.3 2.9e+02 2.4 0.3 11 22 258 269 258 269 0.88 9 18 2.8e-05 0.0025 18.3 1.1 1 23 395 417 395 417 0.99 10 18 8.8e-05 0.0079 16.8 1.5 3 23 425 446 424 446 0.96 11 18 1.2e-05 0.0011 19.5 1.2 1 23 452 474 452 474 0.97 12 18 0.053 4.7 8.1 0.4 1 23 478 500 478 500 0.97 13 18 1.3e-05 0.0012 19.4 0.5 2 23 507 528 506 528 0.97 14 18 6.3e-05 0.0056 17.3 0.4 1 23 534 556 534 556 0.98 15 18 0.34 31 5.5 1.8 1 23 562 584 562 584 0.96 16 18 1.6e-06 0.00014 22.3 0.3 2 23 591 612 590 612 0.97 17 18 6e-07 5.3e-05 23.6 0.6 1 23 618 640 618 640 0.98 18 18 9.1e-06 0.00081 19.9 2.6 1 21 646 666 646 668 0.94
Sequence Information
- Coding Sequence
- ATGCGAATGGAAGAGGACGACGGTCGTTCAGAGGCTGAATCGCCAACGAGTCGTGAGCATCGTCATCGCGAGGAAGACTGCGCGGTGAAAGAAGAGAAGTATCGACTCGAGGTGAGCGGAAGCTCCGAAGAAGTGAACGGTGCGACGACTTGCGACCGTAAATCATCGCCACCAGGGGATGAAACCGTCGAGTGCGACATCTGTCGCAAGATCTTCAGAAAGAAATGTTACATGAGAGTACACATGGGCGTTCACGGTTCGGCCCGGATATGTCACGTTTGCGGCGCCGTGTTCGCGTCGATTCACGGCCTCGAGCAACACACGAGACGTCACAATCGCGATTATTCGGATTGTGAAATATGTCGCAAGGGATTTCACTACGTGGCCGTGCTCAAGCTTCACGCTACAACGCACGCCAACGAGAAGTCCGTAGCTTGCGAAATTTGTCCTCGAGCATCCGCCaatcgcgtttatctcagaagtCACATGAGGACTCACGTCGATCCTCAAACGCGCAAGAGATACAAATGCGAGATTTGCGAATACGAGACCTTCTATAGGTATTGCTACAAAGAACATCGGGAAACTCACACGGCCGAGGGAAAAGTCCCGTGCGACGTGTGCGGTAAATATGTGCGACGACGATACATGAGGATACACGGGAAAATTCACAGCGGCGAGAAAAGCGAGATTTGCGAATTTTGCGGCAAAGCTTTCGGGACGAGGAAACATTTGACGAAATACACGAGAATTCATACGGTCGATCGAAACTCCCGGCGCTCCGATCTCACGAAACATCTCAAGAGACCGCGCGACAATGAACTGTCATCGTCTCATCCGAGATGGTTTCCGGTTGTCAAAAATTCTCGCTGTCCTTTGATCGATCTGACGGAGTTTGTCGTTTTCAGGTGCGCAACGGCCCAGGATGTAAAGCCGAACAAAGAGGAACGAATGGAGGACCAGGCCGACGAGGAACCTTACAAAGAAGAGGTCGTCAACGAGGTGACAAGCTTTGCCGAGCAATTGGAGACCTTCGAGGAGGACGAGATCGCAACGGAAACGCTCGAGTACGCGTCGGAGATTGACGATAAGAATTCACTTGCtcgcgagactctagcgatggAACTAATGGAGAAAAATTCTATCGAAGCCGTCAAATTGTCGAGGAAAACACGTAAGATATACGAGTGTGAAATTTGTGGCAAGATCACGAGAAAGAAGCTCCAATACATGCGACATCGTCGAGTACACGAAAAAACGAGTATCGGCAATTGCGAGCAGTGCGAGCGTTCCTTTCACGATGAGGAACAGTTGCGCAAACACATGATAAAGGCTCACCAAGAAGCTCGTCCTTATCCCTGCGAGCTCTGCGGCAAATCCTTCAAAACCGAGGAATTCCTGAAGACCCACTCGAAGCAACACAACAAACATTTCACGTGCGACATATGCGGCGTATCGAAAGTTTCCGGCTACGATTTGAGGCTCCACAAGAAGAAGCACAATCAGGAATACGTCATACGTTGCGAGATATGTGACAAAGGATTTTACACGAATCAGACCCTCGAGCGTCATTCGTTAACGCACACGGGGGAAAAACCTTTCGTTTGCAAAGTTTGCAAAACTCCGTACGCCAGTTCGGCTTATCTGAGCATGCATATGAAGTCGCACGGCAAGCGGGAAAAGCACAAGTGCAACGTTTGCGATTTCGAGAGTCATTGGAAAGCCGCCCTCAAGGTACATCTCAAAATACACACGGGTGAGAATCAGATAAGCTGCGATCTCTGTGGCAAATCGGTCTCGAGCAAAACTTACCTCAGAATTCACATGAGAATTCACTCGGGCGAGAAACCCCACGTTTGCGAGATTTGCGGCAAAGCATTCAGCGTGAGGAAGTATCTCGTGGTGCATCTGAGAACTCACACAGGCGAGAGACCGTACGAGTGCAAGACATGCGGCAAGAGATTCACGCAACAGGGGTCCCTCAACGCCCACGCAAAGTGTCACAATAAAGAAACCAAGTGA
- Protein Sequence
- MRMEEDDGRSEAESPTSREHRHREEDCAVKEEKYRLEVSGSSEEVNGATTCDRKSSPPGDETVECDICRKIFRKKCYMRVHMGVHGSARICHVCGAVFASIHGLEQHTRRHNRDYSDCEICRKGFHYVAVLKLHATTHANEKSVACEICPRASANRVYLRSHMRTHVDPQTRKRYKCEICEYETFYRYCYKEHRETHTAEGKVPCDVCGKYVRRRYMRIHGKIHSGEKSEICEFCGKAFGTRKHLTKYTRIHTVDRNSRRSDLTKHLKRPRDNELSSSHPRWFPVVKNSRCPLIDLTEFVVFRCATAQDVKPNKEERMEDQADEEPYKEEVVNEVTSFAEQLETFEEDEIATETLEYASEIDDKNSLARETLAMELMEKNSIEAVKLSRKTRKIYECEICGKITRKKLQYMRHRRVHEKTSIGNCEQCERSFHDEEQLRKHMIKAHQEARPYPCELCGKSFKTEEFLKTHSKQHNKHFTCDICGVSKVSGYDLRLHKKKHNQEYVIRCEICDKGFYTNQTLERHSLTHTGEKPFVCKVCKTPYASSAYLSMHMKSHGKREKHKCNVCDFESHWKAALKVHLKIHTGENQISCDLCGKSVSSKTYLRIHMRIHSGEKPHVCEICGKAFSVRKYLVVHLRTHTGERPYECKTCGKRFTQQGSLNAHAKCHNKETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -