Basic Information

Insect: Ophion ventricosus
Gene Symbol: chn
Assembly: GCA_963932345.1
Location: OZ010722.1:12689-20836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 1.3e-06 0.00012 22.5 1.3 1 23 271 293 271 293 0.99

2 28 3.1e-06 0.00027 21.4 1.1 1 23 299 322 299 322 0.95

3 28 0.009 0.8 10.5 0.9 1 23 328 350 328 350 0.98

4 28 0.0031 0.28 11.9 3.6 1 23 356 378 356 378 0.96

5 28 0.00076 0.068 13.8 2.7 1 23 384 406 384 406 0.98

6 28 0.00064 0.058 14.1 1.0 1 23 412 434 412 434 0.98

7 28 0.00015 0.013 16.1 0.3 3 20 500 517 498 519 0.94

8 28 0.013 1.2 9.9 0.3 1 20 538 557 538 559 0.95

9 28 0.00077 0.069 13.8 0.7 1 23 589 611 589 611 0.98

10 28 2e-05 0.0018 18.8 1.6 1 23 617 640 617 640 0.97

11 28 1e-05 0.0009 19.8 1.4 1 23 646 668 646 668 0.98

12 28 4.9e-07 4.4e-05 23.9 0.6 1 23 674 696 674 696 0.98

13 28 0.00044 0.039 14.6 0.7 1 23 702 724 702 724 0.98

14 28 6.5e-06 0.00058 20.3 1.1 1 23 730 752 730 752 0.98

15 28 0.00016 0.014 16.0 0.4 2 21 759 778 758 779 0.94

16 28 0.01 0.9 10.3 1.3 2 23 821 843 820 843 0.96

17 28 5 4.5e+02 1.8 0.2 3 12 850 859 849 871 0.86

18 28 4.1e-06 0.00037 21.0 0.6 1 23 968 991 968 991 0.97

19 28 0.00083 0.074 13.7 0.6 2 23 998 1019 997 1019 0.97

20 28 3.5e-06 0.00031 21.2 4.6 1 23 1025 1047 1025 1047 0.99

21 28 0.001 0.09 13.5 0.8 1 23 1053 1075 1053 1075 0.96

22 28 0.0033 0.3 11.8 0.4 1 23 1178 1200 1178 1200 0.98

23 28 0.0011 0.095 13.4 6.1 1 23 1206 1229 1206 1229 0.96

24 28 9.7e-05 0.0087 16.7 0.6 1 23 1235 1258 1235 1258 0.97

25 28 1.4e-06 0.00012 22.5 1.0 1 23 1264 1286 1264 1286 0.98

26 28 0.00097 0.087 13.5 1.0 1 23 1292 1314 1292 1314 0.96

27 28 8.4e-06 0.00075 20.0 2.2 1 23 1320 1342 1320 1342 0.98

28 28 0.00028 0.025 15.2 2.5 1 23 1348 1371 1348 1371 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	1.3e-06	0.00012	22.5	1.3	1	23	271	293	271	293	0.99
2	28	3.1e-06	0.00027	21.4	1.1	1	23	299	322	299	322	0.95
3	28	0.009	0.8	10.5	0.9	1	23	328	350	328	350	0.98
4	28	0.0031	0.28	11.9	3.6	1	23	356	378	356	378	0.96
5	28	0.00076	0.068	13.8	2.7	1	23	384	406	384	406	0.98
6	28	0.00064	0.058	14.1	1.0	1	23	412	434	412	434	0.98
7	28	0.00015	0.013	16.1	0.3	3	20	500	517	498	519	0.94
8	28	0.013	1.2	9.9	0.3	1	20	538	557	538	559	0.95
9	28	0.00077	0.069	13.8	0.7	1	23	589	611	589	611	0.98
10	28	2e-05	0.0018	18.8	1.6	1	23	617	640	617	640	0.97
11	28	1e-05	0.0009	19.8	1.4	1	23	646	668	646	668	0.98
12	28	4.9e-07	4.4e-05	23.9	0.6	1	23	674	696	674	696	0.98
13	28	0.00044	0.039	14.6	0.7	1	23	702	724	702	724	0.98
14	28	6.5e-06	0.00058	20.3	1.1	1	23	730	752	730	752	0.98
15	28	0.00016	0.014	16.0	0.4	2	21	759	778	758	779	0.94
16	28	0.01	0.9	10.3	1.3	2	23	821	843	820	843	0.96
17	28	5	4.5e+02	1.8	0.2	3	12	850	859	849	871	0.86
18	28	4.1e-06	0.00037	21.0	0.6	1	23	968	991	968	991	0.97
19	28	0.00083	0.074	13.7	0.6	2	23	998	1019	997	1019	0.97
20	28	3.5e-06	0.00031	21.2	4.6	1	23	1025	1047	1025	1047	0.99
21	28	0.001	0.09	13.5	0.8	1	23	1053	1075	1053	1075	0.96
22	28	0.0033	0.3	11.8	0.4	1	23	1178	1200	1178	1200	0.98
23	28	0.0011	0.095	13.4	6.1	1	23	1206	1229	1206	1229	0.96
24	28	9.7e-05	0.0087	16.7	0.6	1	23	1235	1258	1235	1258	0.97
25	28	1.4e-06	0.00012	22.5	1.0	1	23	1264	1286	1264	1286	0.98
26	28	0.00097	0.087	13.5	1.0	1	23	1292	1314	1292	1314	0.96
27	28	8.4e-06	0.00075	20.0	2.2	1	23	1320	1342	1320	1342	0.98
28	28	0.00028	0.025	15.2	2.5	1	23	1348	1371	1348	1371	0.95

Sequence Information

Coding Sequence: ATGGAGCCGGACGAAGGAGGGGTTTTCGAGCCTACCGAGGGACATTTCGTTCATGACGAAATCGGCCAAGCGCCTCTCGCCGACGAGAGATCGGACTCGAACGAAAAGTCCAGCGGCTGGGCCGACGTCTGTAGACTCTGCGCCAAAACGAACGACCACGTCATACCGATATTCGAGGCGGAAGGGGCGCAGCACGACTTGAGCGACAAAATTCATAAATATCTGCCGATTCGGGTAGCAGAAACGGACACTCTGCCGATTCAATTATGCTACCATTGCGCAGCGACGATCCTCGCTTGGCACGAGCTCCTGGAAGGCTGCTTGGACGCGCAGAGACAACTCGCCGAGATGCATTCGGAGCGAACGTCCAAAGAACAGATTCGATCCAAAGACGACCAAGACTCGAGCGAGGAGGTGGAGGATCCCGAGCCAAGGTGTACCGACAAGGAAGATTCCGGCGCGATCCAGCCGGGAGAAATGGAACAGTCCGGCGAAGACTCAAAACCAAGGTCCGATATAGCCGAGGAGACATTTAGACTGTTCCTCGACAAGCAGAATGCGTGTCGAGGTACGAGAAGGATAAAAAATGATATTAGCCACGTCGCATTTGACGGAAGAAAAATTTCGCGCGAGGCAAATATCGCGACTCGCGTCTCGTCACAGGAGCCCGCGAGCGAGGATCATCGCGACGTGGATActgaaatatcaaaaaaggaGAATTCGCGCGTGGTTTGCGAGGGTACGATCCTCGGAAATAATTGCAATTGTCGCCAAGGATCGCACGAGGACACGTTGACTGCGAGAAAAACGTACAAATGCGCGGACTGTTCCAAGATATTTCGCCTCAAGGATTCACTGACGCGTCATCAGCGTATACATCGTGACGAGAGGCCATTCACTTGTCACGTGTGCGGCAAACAATTTCGCGATTCCGGTGGACTCTCGCGACATCTCAAAGACGTACacgcaaaattgaaaaaattcacctgcGACATATGCGCCAATAGTTTTTCCTCGAAAGCAACGCGCGACGATCATCGTCGCACCCACACAGGCGAGAGGCCTTACAATTGTGACAATTGCGAAAAAACTTTCAAGTCCCGCGCATGCCTATATATTCACAGTAAACTACACACCGACCAATTCCCCTATCCTTGCGTACATTGCGAGAAGAAATTTCGTCGACGCCAAGAGATGTTACTTCATCTGACGACTCACACAGGCGAGAGGAATTACAGTTGCGACGTGTGCTCGCGAAGATTTCGCGTCAAGACTGAGGTTGCGAGGCACAAATTGACGCACTCGGACGAAAAGCCaTACGACGCAGCGGCGGACGCGAGATTcgaggcggcggcggcggcggcggcggcggcggcggcgaggAGGGAAAGGCGGGCGCGAAGAGCGCCTTGCGAGCAACCCCCGAAGCTGTCGACGAAAGAAGCCGTACCGCCCTTAGAAAAATGCAAGAACGCGGTTAGACCGAGCACAATAGCGTGCGACAAGTGCACAAGAGTGTTCAAGAATGAAAGAAATCTGAAGAGGCATCGCGCGAATTGTCGCGTTGACAAAAGCGTCGAGGATGTTGGCGCGAGGCGCGAATTAGGAAATTATCGTTGCGCACGTTGCGATTACACGACGAGAAGGAAGAGACTCTTGATGCTTCACGTGAGCGAGTGCGAGGAGGAAGGGGAAATGAGGAATAAGGATGGAAATAGAGATAAGGTCGTAAGAGGAAGAATGGAAGCGAACGGTCGTGTCTATTATCACTGCGAGGAATGCGGTAAAAATCTTTTCTCACCTTACACGTTCGCTTGGCACGTTAGAATTCATACGGGCGAGAGATCCTTCACTTGTCATCTTTGTGGCAAGCAATTTCGTGTGAATCAAGGCCTGGCGCGACATTTGCGCGAGACTCacgcgcaaataaaaaacttCTCGTGCGACATTTGTTCACGTACGTTCACGACGAAACGAAACGTCGAGGATCATCGACGCGTACACACCGGCGAACGTCCGTTCGTTTGTAACGTTTGCGGCAAAGCTTTCAAGCAAAAAGCTTCGCTATTCGTTCACAATCGTACACACAACGACTCGTTTCCGTTCAAATGTAGCTATTGCAATCAGGGATTTCGCACGAGGCCGCCACTCGTCGTACATCTCACCAAACACACCGGCGAGAAAGCTTATACCTGTGACATATGCGAACGTTCCTTTCGGATCAAGTACGAACTCAAGCGACATCGCCTCGTACACTCGGATGAGAAACCCTGGCGGTGCTCCGATTGCGGCACGGGCTTCAGACAGAAACGATATCTCCTTAATCATCGTAAAGTTAATCGTGGATGCGCCAAGGATACGACCAGTTCGTCACAGGAACAAATGTGCGAATGTATGGTCTCGACGTTGAGCGTCCTCGAGAGCGAGACAATAATCTACGATAACGAGGTGAAAAATGTATATTGCGATCAGTGCGATTGTTGCTTTAGCCAAGTGCCCGTACTCGTGGAGCACATGAGAAACGTCCACGACGATAATGTGAATCATTGTCGTTACTGCGATATCGTGTTTCGCGGTCCGACGAAAGATTTTATCGAGCACGTTGCCAGTCACGAGAACGACGCCGCGATCCAAGACTTTGAAGATTCGACGAATCATCGTTGCCCAATTGAGAGGGACGGATCGATGGGTCGAGAGATCAGTAGAAGATCGAAGGACGATCTTTTAGGGATCGACGAAGAGTCGAAATTGGTCGAGGAAACGCTCATCGATACGGATGACGATTGGATCGTTTCGACGAAAGAAAATACGCTGCACAAGGAGAAGGCAGGAAAGGATATTGTCGATACGCCGGAGAATATCGTAAAGCAGGATGAATCCGTGCAAGTTTCGAAAAGCTCGTACATGTGCGAATTTTGCGGCAAAACGTACACGACTATAGCGAATCTTCGTATTCATCAGAAGAGCGATCACGCGGGTTTGCGTATGCAAATGTGCGATCTTTGCGAGCGTAATTTCGTATCGAAAAGCGCACTCGATTATCATCGACGCTCGCACACGAGACAACGGCCGTACAAGTGCGAGTACTGTGACAAAAAGTTTTGCACACTTAGCTCGCTTTACGTGCATCGACGGGTACACGCTAATCGTCAGCCTTACGTTTGCAAGAAATGCGACGAGAGATTCCTTACGAAAGAACAATTGTTTCAACATCTCGAAGCGCATAAAAATGTTTCATCAAGAAAAAGTGGGAAAAAGCTCGAGGAGAATGTTAGCGTTGCCGCCGctaggaagaaaagaaaaagcgcGAGAGTACTCGGGACGATAAACTTGGCGGGGACGAAAGAAAAGTCAAGAAGCGTATTATCGAGGCCGCCTACCGGAAGAAGCCGTAACGCGAagagaagaaagaatacgcctgAGGATACGGAGATACTCGCGATCGTTGGAGGGCCGAGTGAAGATAAATCGCACGAGGAGGAAATAACGTGCAAGACatcgtcgagaaaaaaattcaacgacgTTGATCCGTACGTGTGCGACTTTTGCGGCAAACAATTTCTTCTTCGTGGCAGTCTCATGTCTCATCTGAGACTACACACCGGTCTAAAATACTTCACTTGCCACATATGCGGCAAACAATTCGCACAAAACGGCTGTCTTTATTATCATCTCAAGCACGTACACGGGGGTGTGAAAGATCACTCGTGCGACATTTGCGGTAGATCGTTTGCGATGAAAGCCACGATGGAAGACCACAGACGCTCGATTCACACGGGCGAACGACCTTACGTTTGCGACTCTTGCGGCAAAACCTTTACGACCAAATCCTCGCTTTACATACACAGCCGTATTCACACAGAGAATTATCCTTAcgagtgtaaatattgcaaaaaatccTTCAGATGGAATCAACAGCTGATCGGACATTTGACGATACACACGGGCGAAAGGAATCACACCTGTGACCTTTGCGGCAAAGCTTTCGGCGTTAAAAATCAACTCACCAGACACAAACGTACGCACAATACTGACAAGCCATATACGTGTGAAAAGTGCGGCATGAGATTTGGACAAAAGCGTTATCTCACTAGCCACGAAAGGTTCAAACACggataa
Protein Sequence: MEPDEGGVFEPTEGHFVHDEIGQAPLADERSDSNEKSSGWADVCRLCAKTNDHVIPIFEAEGAQHDLSDKIHKYLPIRVAETDTLPIQLCYHCAATILAWHELLEGCLDAQRQLAEMHSERTSKEQIRSKDDQDSSEEVEDPEPRCTDKEDSGAIQPGEMEQSGEDSKPRSDIAEETFRLFLDKQNACRGTRRIKNDISHVAFDGRKISREANIATRVSSQEPASEDHRDVDTEISKKENSRVVCEGTILGNNCNCRQGSHEDTLTARKTYKCADCSKIFRLKDSLTRHQRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKKFTCDICANSFSSKATRDDHRRTHTGERPYNCDNCEKTFKSRACLYIHSKLHTDQFPYPCVHCEKKFRRRQEMLLHLTTHTGERNYSCDVCSRRFRVKTEVARHKLTHSDEKPYDAAADARFEAAAAAAAAAAARRERRARRAPCEQPPKLSTKEAVPPLEKCKNAVRPSTIACDKCTRVFKNERNLKRHRANCRVDKSVEDVGARRELGNYRCARCDYTTRRKRLLMLHVSECEEEGEMRNKDGNRDKVVRGRMEANGRVYYHCEECGKNLFSPYTFAWHVRIHTGERSFTCHLCGKQFRVNQGLARHLRETHAQIKNFSCDICSRTFTTKRNVEDHRRVHTGERPFVCNVCGKAFKQKASLFVHNRTHNDSFPFKCSYCNQGFRTRPPLVVHLTKHTGEKAYTCDICERSFRIKYELKRHRLVHSDEKPWRCSDCGTGFRQKRYLLNHRKVNRGCAKDTTSSSQEQMCECMVSTLSVLESETIIYDNEVKNVYCDQCDCCFSQVPVLVEHMRNVHDDNVNHCRYCDIVFRGPTKDFIEHVASHENDAAIQDFEDSTNHRCPIERDGSMGREISRRSKDDLLGIDEESKLVEETLIDTDDDWIVSTKENTLHKEKAGKDIVDTPENIVKQDESVQVSKSSYMCEFCGKTYTTIANLRIHQKSDHAGLRMQMCDLCERNFVSKSALDYHRRSHTRQRPYKCEYCDKKFCTLSSLYVHRRVHANRQPYVCKKCDERFLTKEQLFQHLEAHKNVSSRKSGKKLEENVSVAAARKKRKSARVLGTINLAGTKEKSRSVLSRPPTGRSRNAKRRKNTPEDTEILAIVGGPSEDKSHEEEITCKTSSRKKFNDVDPYVCDFCGKQFLLRGSLMSHLRLHTGLKYFTCHICGKQFAQNGCLYYHLKHVHGGVKDHSCDICGRSFAMKATMEDHRRSIHTGERPYVCDSCGKTFTTKSSLYIHSRIHTENYPYECKYCKKSFRWNQQLIGHLTIHTGERNHTCDLCGKAFGVKNQLTRHKRTHNTDKPYTCEKCGMRFGQKRYLTSHERFKHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -