Oobs021537.1
Basic Information
- Insect
- Ophion obscuratus
- Gene Symbol
- -
- Assembly
- GCA_964007375.1
- Location
- OZ023318.1:14027075-14032334[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.22 13.2 2.1 2 23 308 329 307 329 0.97 2 11 0.0098 1.6 10.5 0.5 1 23 337 360 337 360 0.97 3 11 1.5e-05 0.0025 19.3 2.2 1 23 396 418 396 418 0.98 4 11 1.2e-06 0.00019 22.8 1.8 2 23 459 480 458 480 0.97 5 11 0.0004 0.064 14.8 3.2 1 23 485 508 485 508 0.96 6 11 1.2e-06 0.0002 22.7 0.6 1 23 546 568 546 568 0.98 7 11 8.9e-07 0.00014 23.2 0.9 1 23 578 600 578 600 0.96 8 11 2.5e-06 0.0004 21.8 1.2 1 23 606 628 606 628 0.99 9 11 1.3e-05 0.002 19.6 0.2 1 23 634 656 634 656 0.98 10 11 0.0022 0.35 12.5 4.2 1 23 662 684 662 684 0.98 11 11 0.00047 0.075 14.6 0.3 1 21 690 710 690 711 0.94
Sequence Information
- Coding Sequence
- ATGGAAATGAATGTTACGAATAACAATAAGACGGTATTAGATACCGTCGATCGGTTGCAAATAACGAGTAGCGATTGTCGCATTTGCTTTGAAAAATGCGCCGAGGTGTGGCGAATATTCGATCCCACAAACGAAGACATACCAAGGAAGCTGATGAACTTTGCTGCTGTGCAGGTAGAAGAAGGCGATGGTTTACCAGCTACAATATGTCAGAATTGTCTTCGTCTTTTAGACATTGCGTACAACTTTAAATGCCAGGTGGAACAATCTGATGCAAAATTCAGAGAGATTCTCATACTGAAAGACTCTAGTGAggaagatgaaaaaatgttggCCCTCTCACAATCGGTAGACGTGGTGATAACTGAGGCTATGGCGAATGGGTGTAACCATGAAACAGAGTGTGCAGAACTGGTAGGAGCCCTGGACGTTGAAACCCCTCATGACTTAGTTGACCAACTGAGCGAACAACATTACATGTCTGATCACGAGCCGATGATTTTCTGTATCGAGCGGCCATCCGAGCCTCGAGAGGGCTCTGTCCCTAAACAAACATTGCCATGCATCCGAAGCGAAGAATGCGATGACGTGAATGAGAAACACACAGTTATGAACGTTCCCCACGATAATCAGGTGGGCAACGTTCGGATAGAAAAATACGATGACCTTGTTGATACGAAAATCCGGGGAGAACCGTACAAATCAGAAGCAATGATGATTTCTGGAGATATATCATCTGAGGAGGACAATAAGGCGGGTATtgcggaaacaaaaaatatagcGCGACTTACGATAGAGAGCAAAAGTATAAAGGCAACAATGATTGAGAACGACCACAATAATTGTACACTGGAAAAGAAGAAAGAGTGTTGCGAGATCGACGGCCAAGAGAAACCTCTCATCATGCGAACACAGCGGCTAAAGTGTCCTAACTGCATAAAGACATTTGGGACAAAGACATCACTCCACCGACACGCCAAGGTGCACAAGAGAAAAACTAATGTACGCTATGTGTGCCATGTGTGCGCCGAACCATTtgcgaatattaaaaaaatgaaaagtcaCCTCCTGTCAAGCCACGGCGATTCGATGATGAGTGATGATGAAATTAGTGAAATCGCGAGCCACAGGACGATAACGGATAAACAAACCGTTAGTCCGgacaatggcaaaaaaaatatgaaatacagCTGCAATATTTGTGGCAAACAATTTACctatcaaaaatcatttttgactCACGCAAAAAGTCATCCAGACTACGAGGCCAAGACCATTATCAAGAAGGACGAGAATAACATCGTTGTCTCGTCGGAAGATTCCAACGATCGCGAGTACGAGTCCGAGGACGACGATATGTCGCTCGAGGGATTGCAGTGTACCCAGTGCGGCAAATTATTTGCAACTAAAAGAAATCTCAAAAGACACCTGTCGACACATAGCGGTTTGAAGTTCCATTGTCCGACATGTAACAAACAATTCTCTCGTATCGACAAACTCAAAGAGCATGAACAGTCGAAACATAAGGATGAGTTCCTTGCCTCCTCGGATGCCGATTCCGATGTCGATACAGATAACGAGAACAAGAACCACGACGGAAGTGAGAATCGAAAAAAGGAGAAGCACAACAGGCCTCACCAGTGTCCAATGTGTCCCAAGGCATTTGCTCAGGAGCAGTCGCTTACGAATCACATGGAGCGTCACAAGCGAGTGAAAGACACGCAAAAACGTTTTCTCTGCGAAGTGTGCAGCAAATGTTTTGCCCAGAGTGGCTCTCTGGTGGCTCACATGCGTACGCACACGGGTGTCAAGCCATACGTGTGCAATGTTTGCAGCAGAGCTTTCACAAAGAGTACGTATCTGCAGCTCCATCTGCGAACGCACAGTGGTGAAAAACCTTACATATGTCAGTACTGCAGTCGAGCGTTCGCACGTGCTAACACACTGGCGCGGCACATTACGATGCATACCGGTGAAGCGAAATACCATTGTCAAATTTGTATGAAGTCGTTCAGACGTTTGACCTCCCTGAACGAGCACACTTATACTCACACAGGTCAGCGCCCGTATGCCTGTAAAATATGCACGAAGAGATACAATAACGCTGGCTCGCTCTAcgctcatacgaaaaaatgcaaaGCCCAACAGTTATCGGGTACAATGACGACTTATGCGTTGCCTGTAGAGGATGGGATTCATCAGAACGGTGACACGCCACCTCAGATGATGATTTACTCGCAGAGAAAATTGTCTGAGCATTCGTCTATTGAGCAAGTTGAGCCAACGTCGCACTTCATGCTCTCCAATGTTCACAATCCATCTGTCAAGACATTACCCACCAATATAATACCACAGTTTACTGTCGAAGATCCAAACTTTTGTAGTGGCAATGCCAAGGCTTACAAAAATTCTTATTACACGATATTTCCGAAcatgtaa
- Protein Sequence
- MEMNVTNNNKTVLDTVDRLQITSSDCRICFEKCAEVWRIFDPTNEDIPRKLMNFAAVQVEEGDGLPATICQNCLRLLDIAYNFKCQVEQSDAKFREILILKDSSEEDEKMLALSQSVDVVITEAMANGCNHETECAELVGALDVETPHDLVDQLSEQHYMSDHEPMIFCIERPSEPREGSVPKQTLPCIRSEECDDVNEKHTVMNVPHDNQVGNVRIEKYDDLVDTKIRGEPYKSEAMMISGDISSEEDNKAGIAETKNIARLTIESKSIKATMIENDHNNCTLEKKKECCEIDGQEKPLIMRTQRLKCPNCIKTFGTKTSLHRHAKVHKRKTNVRYVCHVCAEPFANIKKMKSHLLSSHGDSMMSDDEISEIASHRTITDKQTVSPDNGKKNMKYSCNICGKQFTYQKSFLTHAKSHPDYEAKTIIKKDENNIVVSSEDSNDREYESEDDDMSLEGLQCTQCGKLFATKRNLKRHLSTHSGLKFHCPTCNKQFSRIDKLKEHEQSKHKDEFLASSDADSDVDTDNENKNHDGSENRKKEKHNRPHQCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSGTMTTYALPVEDGIHQNGDTPPQMMIYSQRKLSEHSSIEQVEPTSHFMLSNVHNPSVKTLPTNIIPQFTVEDPNFCSGNAKAYKNSYYTIFPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100788;
- 90% Identity
- iTF_01102246;
- 80% Identity
- -