Oobs001399.1
Basic Information
- Insect
- Ophion obscuratus
- Gene Symbol
- -
- Assembly
- GCA_964007375.1
- Location
- OZ023312.1:28406507-28422034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 2.5 9.8 0.1 1 23 122 145 122 145 0.92 2 17 0.064 10 7.9 0.1 2 23 201 222 200 222 0.93 3 17 0.0058 0.93 11.2 3.1 1 23 228 251 228 251 0.94 4 17 0.0062 0.99 11.1 1.6 1 23 252 275 252 275 0.94 5 17 0.0036 0.58 11.8 0.1 1 23 280 303 280 303 0.96 6 17 3e-07 4.7e-05 24.7 0.4 1 23 318 340 318 340 0.98 7 17 7.6e-05 0.012 17.1 0.2 1 23 346 368 346 368 0.97 8 17 5.2e-06 0.00084 20.8 0.1 1 23 374 396 374 396 0.98 9 17 6.2e-05 0.0099 17.4 1.4 1 23 616 639 616 639 0.95 10 17 0.025 4 9.2 0.3 1 23 645 668 645 668 0.92 11 17 0.014 2.3 10.0 0.2 2 23 724 745 723 745 0.96 12 17 0.00011 0.018 16.6 1.8 1 23 751 774 751 774 0.95 13 17 0.016 2.6 9.8 3.1 1 23 779 802 779 802 0.93 14 17 0.00049 0.079 14.5 0.2 1 23 807 830 807 830 0.96 15 17 4.3e-06 0.0007 21.0 0.2 1 23 845 867 845 867 0.98 16 17 5.2e-05 0.0083 17.6 0.3 1 23 873 895 873 895 0.97 17 17 5.2e-06 0.00084 20.8 0.1 1 23 901 923 901 923 0.98
Sequence Information
- Coding Sequence
- ATGACCGGTCATACAATCGACGGCCAAGTGCGTACCAGAAAGCTCATAGGCAAATCGGTAACGTCGAATAAAAGCGAAGTGAGCAGCAACGGATACGTCGATTGTTCGACTACGACGACAATCACGCCTTCGTTGTCGATCAAGGTCAAGTGCGAGGATGAGGATGCGAAAGACGGAGGAGAGGAAATTTGCGACGACGACAACTACACGATATTGCCATTTTGCGAGGTCAAGATAAGATACGACGATGAGGAGGCTCCCTGTGCCGACGAGGACGACGGGCTCGTTCAACTAAACGGCAGCGGCGAGGATGATGTTtctggtgattacttcaccgagGCAATACCCGAGGCGATACAGTGCTTCAGGTGTAAGATATGCCTCGAGACGTACAACAATGCGTTGGCTTTCGAGTCACATATGGTTGCGGAGCACGCTACCGACATCGACAATAGCGACGAATTCCTGGAGAAGATAACCCTTTATCGAGTCTCCCGCGGTACCTCGCACCACACAAGAGTCAAGAGAAATCCCGATGCGCGACGCAACAACGAGGCCGGTCACGTGACCACGAGCTTCGAGAAGAAATCGAACGTGCTCTCGTGCAGTCAGTGCGACTACGAATCACCGAGCAAACGTTCCCTCGCCGTTCACGTCGCCGAACACGTCGAAAATGGTAAATTCGCGTGTAAAACGTGCGGTCGTAGTTTCAATAGCCGTCCCAAGCTCAAATGTCACGTGAGGCTCAGTCATCACATATGCGACGTTTGCGGGCGAATATATCGGGGCGCCAAGACTCTCCACAATCACCGTACATCCGTACACTTCGGTGGTCCATACGATTGCGTTGTTTGCGGTCGTTTGTACGCGAGCAAAAAGACACTCGATGTTCACATGGCGAAAGTTCACATCGAGAAAAGACCGCCGAAAGAGGTGAAAAGAACGGAAAACTTTGTATGCGACGCTTGCGGCAAAGTATTTTCACGTTCCGACAGACTAAGAACGCACATGAGAGTACATAACGGCGAGAAACCCTACGTATGCGCCATTTGCAAAGAATCGTTCGCCAAAAATAACTCCCTGAGGCAACACTTGATTTTGCACACCGGTGCTAAACCCTACGTGTGCGACATATGCGGCAAGGCCTTCGCTCAGAAACCCGGCCTCACCGGACATCGCAAATCACATCCGGGCCAACATCCGCCCTTGCCACCGGTCTTCATCGATCCCATTATCGACGACCTCCTACGACAGCGATCTTTGAGGATTCGGCGTTCGCATCCGCATTTAGAGGTGACGCCGAATAAGAGCGAAGAGAGCAGCAACAGGTACGTCAGTTGTTCGACAACGACACCGACCACGTCATCGTTGTCGATCAAGGTCGAGCGTGAGGAGGTGGAAGATGATGATGAGGATATTTGCGACGATGAGAACGACACGATATTGCCATTTTGCGAGGTCAAGATAAGATACGACGATGAGGAGGCTCCCTGTGCCGGCGAGGGCGACGAGCTCGTTCATCTGAACGACGATAACGACGAGGACAATGTTTTCGACGTGACGTCGAATAAGAGCGAAGAGAGCAGCAACAGGCATGTCAGTTGTTCGATGACGACACCGACCACGTCACCGTTGTCGATCAAGATCGAGCGGGAGGAGGAGTATGAGGAGGAGGCGGAAGAAGACGACGAAGACGAGGAGATTTGCGACGACGAGAACGATACGATATTGCCATTTTGCGAGGTGAAGATAAGATACGACGATGAGGAGGCTCCCTGTGCCGACGAGGGCGACGAGCTCGTTCATCTGAacgacgaaaacgacgaggacgATGTTTTCGGTGATTATTCCTGTCAGAAGTGCAACATCTATTTCACTACTTGGAACATGCTCAAGAGACACACGAAGGCGGTACACGAGGCGATACAGTGCTTCAAGTGTAAGATATGCCTCAAGGTGTACAACAAAGCGTTGGCTTTCGAGTCACACGTGGTCTCGGAGCACGGTACCGGCCTCGATATTACCGACGATTTCTTGGAGAAGCTTACCCTTTATCGAGTCTCGCGCGGTACCTCGTTCTACACAAGGGTCAAGAGAAATCACGATGCGCAACGCAATAACAACACCAGCGATGTGATCATCAGCTTCGAGAAGAAATCGAACGTGCTCTCGTGCAGTCAGTGCGATTACAAATCACCAAGCAAACGTTCCCTCGCGGTTCACGTCGCTAAACACGTCGAAACTGGTAAATTCGCGTGTAAAACGTGCGGTCGTAGTTTCAAGATACGTCGCGAGCTCACCTATCACATTAGGTTCAGTCATCGCGAGCAGAATCACATATGCGACGTTTGCGGGCGAATATATCGGGGCGCCAAGACTCTCCACAATCATCGTAAATTCCGACACTTCGGTGGTAAATACGAGTGCAAAGTATGCGGTCGTTTGCTCGCGAGTCAGAAGAATCTCAATTCTCACGTGGCGAAACTTCACGTCGAGAAACGACCGCCGAAAGAGGTGAAAATAACGGAAAACTTTGTATGCGACGCTTGCGGCAAAGTATTGTCACGTTCCGACAAACTAAAAATGCACATGAGAGTACATAACGGCGAAAGACCCTACGTTTGCGCCATTTGCAAAGAATCATTCGCCAAAAAGAACTCCCTGAGGCAACACTTGATATTGCACACAGGTGCTAAACCCTACGTGTGCGACATATGCGGCAAGGCCTTCGCTCAGAAACCCGGCCTCACCGGACATCGCAAATCACATCCGGGCCAACATCCGCCCTTGCCACCGGTCTACATCGATTCCATTCTCGACGACGTCCTACGACAGTGCGAACAATAA
- Protein Sequence
- MTGHTIDGQVRTRKLIGKSVTSNKSEVSSNGYVDCSTTTTITPSLSIKVKCEDEDAKDGGEEICDDDNYTILPFCEVKIRYDDEEAPCADEDDGLVQLNGSGEDDVSGDYFTEAIPEAIQCFRCKICLETYNNALAFESHMVAEHATDIDNSDEFLEKITLYRVSRGTSHHTRVKRNPDARRNNEAGHVTTSFEKKSNVLSCSQCDYESPSKRSLAVHVAEHVENGKFACKTCGRSFNSRPKLKCHVRLSHHICDVCGRIYRGAKTLHNHRTSVHFGGPYDCVVCGRLYASKKTLDVHMAKVHIEKRPPKEVKRTENFVCDACGKVFSRSDRLRTHMRVHNGEKPYVCAICKESFAKNNSLRQHLILHTGAKPYVCDICGKAFAQKPGLTGHRKSHPGQHPPLPPVFIDPIIDDLLRQRSLRIRRSHPHLEVTPNKSEESSNRYVSCSTTTPTTSSLSIKVEREEVEDDDEDICDDENDTILPFCEVKIRYDDEEAPCAGEGDELVHLNDDNDEDNVFDVTSNKSEESSNRHVSCSMTTPTTSPLSIKIEREEEYEEEAEEDDEDEEICDDENDTILPFCEVKIRYDDEEAPCADEGDELVHLNDENDEDDVFGDYSCQKCNIYFTTWNMLKRHTKAVHEAIQCFKCKICLKVYNKALAFESHVVSEHGTGLDITDDFLEKLTLYRVSRGTSFYTRVKRNHDAQRNNNTSDVIISFEKKSNVLSCSQCDYKSPSKRSLAVHVAKHVETGKFACKTCGRSFKIRRELTYHIRFSHREQNHICDVCGRIYRGAKTLHNHRKFRHFGGKYECKVCGRLLASQKNLNSHVAKLHVEKRPPKEVKITENFVCDACGKVLSRSDKLKMHMRVHNGERPYVCAICKESFAKKNSLRQHLILHTGAKPYVCDICGKAFAQKPGLTGHRKSHPGQHPPLPPVYIDSILDDVLRQCEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -