Olut008129.1
Basic Information
- Insect
- Ophion luteus
- Gene Symbol
- -
- Assembly
- GCA_944452655.1
- Location
- CALYBV010000725.1:386571-389880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 3.5 8.9 0.0 2 23 108 129 107 129 0.96 2 11 0.019 2.3 9.4 1.9 2 20 194 212 193 213 0.93 3 11 0.00039 0.048 14.7 3.5 1 23 353 375 353 375 0.96 4 11 1.1e-05 0.0014 19.6 0.5 1 23 381 403 381 403 0.96 5 11 9e-06 0.0011 19.9 0.3 1 23 409 431 409 431 0.97 6 11 9.8e-05 0.012 16.6 3.3 1 23 443 465 443 465 0.98 7 11 1.4e-07 1.7e-05 25.6 0.8 2 23 472 493 471 493 0.98 8 11 7.2e-08 8.7e-06 26.5 0.8 2 23 501 522 500 522 0.97 9 11 6.1e-07 7.5e-05 23.5 4.7 1 23 528 550 528 550 0.98 10 11 0.00015 0.018 16.0 5.0 1 23 556 578 556 578 0.98 11 11 4.7e-06 0.00057 20.8 4.0 1 23 584 606 584 606 0.98
Sequence Information
- Coding Sequence
- ATGTTTATTGTTACGCAAGAAATAGATGCCGAGAATATAGGAAAATTGTGTCGGACTTGCTTACGTGAAGACGGCGAAAAAATGGTTTGTGTTTTTTCAGGTCCTGCAGGGTCGTCTCTCGCTGCTAAACTAAGAACTCTATCGTGTCTCGAGGTCTGGCAGGGTGACGGCTTACCAGAAAAATTATGTGACCGCTGTGTCACAAGAGCCGAATCAGCCCTACTTTATAGAGAGCAATGCAGAGCTGCCGATTTGGCACTGAGACAAGCAGTCTCCAAGAAGCATGACTATGCACCCATTGAGAGACCTGCCAAAGCTGTCAAATGCATGGAATGTGCAGCAGTATTTTCAAACTATGGAGAACTTGATATTCATGCAAGAGGGCACATGCCCTTTGTCAGAGAAACCCGACCAGTTCAGCACATGAATATAGTAGAATGCCAGAATACAATGGGGTACATAACTGGCACAGCAAGCAATATTGACAAGACTTCCGCCATGTTACAAAATTCTTTCATAGCATCGAGCAGCATAGAAAGCATAGGAAGCGCAAAAAATGATCGTGCATCTTGCGCTCTTCACTGCTCACTCTGTAATCACGCGTTTGTCAGTAGAACGCAGTTGATAAGTCACCACTTGCCGATGCACTGTCACAATGAGGCTGAGAATTCTTGCGACGACGAGAGTTCCATCGTCACAGAGGATTCGAAACTTCATGCTCTCGACGAACGTAATTTTTCACGGTCGATCGACCATCGTTCGGTGGAAAATTCAGTTATCGAAAATTTGTCATATGCACGCGCCAATGAGACGACGATCGAGGCAATAAATTATTCGGCACACATTGCACTGGAAAACACAAACATTGTCAACAACGAGGAAGCGGAACGAGACGTGAACTCGCGAGATCACGTACCGAGCGACTTATCGAACGAATCCTGCAGCGATCGCATACCCAGATTTCCGAATTTCGACGAGGTGGAGATTCACGACAACGTCTACGAAGTTTTAAAAAATCCACCGATCACCAAGATTCCGAAATGTTTTAAGAAAAGTCATAGATGCAACGTTTGCAACAAATTATTCTCTCAGAGATCCAAGCTCTTGTCGCACTCGCTTTCTCACACTGGTGAAAAACCATTCGCCTGCTCAATTTGCGACAGAGCTTACACATCGAGGAGCAAATTGAACGCTCACAACCGTTTGCACACGCAAACGAACGTTCATCGTTGCGACATATGTGACAAGGCGTTTCCCTATCCGTCATACCTCGCGGAACACTCCAAGATCCACGACACCGCGAAGAATCGAAGTCGAACCGGAGATTACCAATGCACAGTGTGCAACAAGCAATTCCACCTGTTGAAAAATTTGAAAATTCATCTACGATTGCATACGGGCAAGGGCCTCGTGCGTTGTGAAATCTGTCAAAAGGCCTTTGGAAAAAAGTACAATTTAAAAGTGCACATGAGAACCCACGGTGTAATTGCAAAATTTTTAAAATGCACTTACTGCGGTAAATCTTTCGCAACGAAGGGCAATTACGTTGAGCATCTAAGAACTCACACGAGAGTCAAACCCTTCAAGTGTCGAATTTGCAACAAGAGCTTTTCTCAATCGAGTCATCTCAAAACACACGAAATGTCCCACAATCCATCGAGACCCCATCAGTGCCGATTATGCGGCAAACGTTACAAACTCGCGGCTCATCTGAGAAGACATACCAGTACGCACGCGAACGTTAAGGTGCACAAGTGCGAACAATGCGATCAAATGTTCTCCCAAGCTTTTAGTCTCAAGCGACACTTGAAAAGACACAGCGAGGCTCAAGTTTAA
- Protein Sequence
- MFIVTQEIDAENIGKLCRTCLREDGEKMVCVFSGPAGSSLAAKLRTLSCLEVWQGDGLPEKLCDRCVTRAESALLYREQCRAADLALRQAVSKKHDYAPIERPAKAVKCMECAAVFSNYGELDIHARGHMPFVRETRPVQHMNIVECQNTMGYITGTASNIDKTSAMLQNSFIASSSIESIGSAKNDRASCALHCSLCNHAFVSRTQLISHHLPMHCHNEAENSCDDESSIVTEDSKLHALDERNFSRSIDHRSVENSVIENLSYARANETTIEAINYSAHIALENTNIVNNEEAERDVNSRDHVPSDLSNESCSDRIPRFPNFDEVEIHDNVYEVLKNPPITKIPKCFKKSHRCNVCNKLFSQRSKLLSHSLSHTGEKPFACSICDRAYTSRSKLNAHNRLHTQTNVHRCDICDKAFPYPSYLAEHSKIHDTAKNRSRTGDYQCTVCNKQFHLLKNLKIHLRLHTGKGLVRCEICQKAFGKKYNLKVHMRTHGVIAKFLKCTYCGKSFATKGNYVEHLRTHTRVKPFKCRICNKSFSQSSHLKTHEMSHNPSRPHQCRLCGKRYKLAAHLRRHTSTHANVKVHKCEQCDQMFSQAFSLKRHLKRHSEAQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100789;
- 90% Identity
- iTF_01102996; iTF_01101521;
- 80% Identity
- -