Olut005073.1
Basic Information
- Insect
- Ophion luteus
- Gene Symbol
- -
- Assembly
- GCA_944452655.1
- Location
- CALYBV010000444.1:136906-152283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00089 0.11 13.6 1.4 2 23 52 74 51 74 0.95 2 17 0.0001 0.012 16.6 0.4 2 23 79 100 78 100 0.96 3 17 1.1e-05 0.0014 19.5 0.5 2 23 111 132 110 132 0.97 4 17 0.0053 0.64 11.2 2.4 1 23 230 252 230 252 0.98 5 17 0.0028 0.34 12.0 0.3 3 20 260 277 259 279 0.93 6 17 0.038 4.6 8.5 1.2 1 23 479 501 479 502 0.91 7 17 3.4e-07 4.2e-05 24.3 0.8 3 23 514 534 513 534 0.98 8 17 5.8e-06 0.00071 20.5 4.9 1 23 554 576 554 576 0.98 9 17 0.00033 0.04 15.0 5.5 3 23 583 603 581 603 0.97 10 17 0.069 8.4 7.7 0.1 1 23 608 631 608 631 0.92 11 17 1e-07 1.2e-05 26.0 0.6 1 23 639 661 639 661 0.99 12 17 0.00013 0.016 16.2 0.4 1 23 667 690 667 690 0.96 13 17 7.6e-05 0.0093 17.0 0.9 2 23 702 723 701 723 0.96 14 17 6.6e-06 0.0008 20.3 2.0 1 23 729 751 729 751 0.96 15 17 3.6e-08 4.4e-06 27.4 0.2 1 23 757 779 757 779 0.98 16 17 2.6e-07 3.2e-05 24.7 0.9 1 23 785 807 785 807 0.98 17 17 0.00039 0.048 14.7 2.0 1 21 813 833 813 834 0.96
Sequence Information
- Coding Sequence
- ATGATCCTTAAATTCATCGTCGCCGAAAACTCCGAGGAGCGAGAAGAATGCGGATGCGAGGTGAGCGGAAGCTCCGAACAAGCGAACGACACGAGGACGATTCAGGGCTGGAAGTCAACACAGGTGGCGTTCACGCAGGTTGACCAATCGGTGGAGTGCGACGTCTGCTGCAAGGTCTTCAAGAAGAAACGTTATCTGCGAGTCCACATCAGAGGCATTCACGGGCCGCCTCTGATATGTCACGTGTGCGGTGTCACCTTGACCACGATTTACAGCCTCGAGCAACACATGAGGCTTCACGCGATCacccacatcaacgtgaagcccgtgacctgcgaaatttgccagcgagcattcgccaatcgcgtctacctcaggaatcacacgaagactcacgtggatcccaaaatgcgcgagagatacaaGTGCGCGACGGCCAAGGACTTAGAGGCGAACGAGGAAGTTACGGACCACGTTGTCGTCGAGAAGCCTAACAGGAAAGAAATATCCGACGAACTGGCAAGCTTCCCCGAGCAATTGGAGCCGTTCGAGGAGCACGAGATCGCGACGGAAACGCTCGCGTACGCGTCGGAGATCGACTCTGAGACTCCACTCTCCCTAGCTACGAGGCCAACGGATAAAAAGTCCCTCAAGCCCGGGAGCTCGTCGAGGCGTCCACGCGTGATCTACGAGTGTGAGATTTGTGGCAAAAGTACGCGAAAGAGGCTTCAGCACGTGCGACATCGTCGAGTACACGAGAAAGCGAGCATCGGCCATTGCTCGCAGTGCGAGATCTCATTTCCCAACGAGGAACAgttgcgcaaacacgtgataaagTTCACGAGGACTCTTTTTGGGACCGTACGAAAGTTCGGGGACACTCGGCGCTTCTTTGCGTTGACGCGAGCGATGAATAGATCCGAATGTCGGAACAAGAGGCGAAAAGGGACGCCATCACGGGCTAGTCTCGTGGAGTTTCTGCACGAAGAGAAACGACGCGACAGGACGCGCTCGCCTGCGTCGAGGTCATCGAGCGACGCCGTGAAGCGCGAGTTGCCGAAGAAACTCGCGACGCAGGACGTCGAAGCTGCGGAGGAGTCTTCTCGCGCCTTCCCAAGGAAGGGATCACTCGCCGAAGCGAATGTGGAAAGTTCGATGCCCGAGAGATCGCGCGAAATCGTCAAGGACACTtacaaATACCGTCAACGTCATTCCCCCGACGAGTTGTACGGAATGGCGATGCTAGAGAAGCTCGATCTGATGAGGAAAACCGTCACGAAGCCCGTGCCGAAGAAGAGGAAACGAACACCGTCGAATTTCGGCCTCCCGGAGGCCATAGCTGTCGCGCCGAAAATGGAGAAGATGGTAATCGCGGAGATCAAGGAGGAATTCGTGGTGGACGACGAGGACGAGCAGGAGGATCTACCATTGGCTTACAATTGCTCGAGCTGCGGTATATTCTTCGCCAATCAGGAGCTCATGGACAAGCACGAGTTCGAGCATCACAGCAGCAAGAAGAAACGTCAGCAGAAGAACGCGTGCAATCAGTGCGGTCGAGTTTTTCGCACGAGCGTCACGTTGCGCAAGCACATGAAGATACACACCGGTAGGAAGCGCAAGGTCCCCAAGAAGCAGCAAAAACGTgaaatcaaggacgaatacacgtgtgacgtatgcaacaaggtgtttcgtcacaagagcaattattacaagcatcgtgcgcgtcatcgtgacgaaaatctcgcgtgcaatcattgcccgaagaagtttcgtctccatcgcgatctcaagaggcacgagaagactcacttttatccgagctacgtgtgcaaagagtgcgattacgagacgaccctgctgacagccctgagcatacacgttggcaagcaacacagcaatccggccgacgtgccctacaagtgcaacgagtgcgacaaatcctttcgacgtccgatcgatcttcaggaacattacaacgttcattcgggcgagaaaccgttcgcttgtcaacagtgcggcgaggctttcaatctcagacgccagctcaccgcgcactttcgacgcgctcatcccgaaatgaaacccgacaaagtcacgagcaccacttgcgacatttgcggccgtgtactctcaaccaagagatccctctcgcgtcacaaagagagtcacaatcccacgaaactttatctctgtgacttttgcggcaagagcctcagcagcgccgaacatctcaagaaacaccggcgcattcataccggtgaaaaaccatacgtctgcgacatatgcggcaaaggcttcaccgattccgaaaatttgcgtctacatcgacgcgtgcacacgggcgaaaagccgtacaagtgcgatcaatgccccaaggcgttctcccaacgttccacactgacgattcatcgccgcggccacaccggcgagagaccgtacgtttgcaagatttgccatcgcggcttctcgtgccagggcaatctcaccgctcatcagaaatccacttgtgtctga
- Protein Sequence
- MILKFIVAENSEEREECGCEVSGSSEQANDTRTIQGWKSTQVAFTQVDQSVECDVCCKVFKKKRYLRVHIRGIHGPPLICHVCGVTLTTIYSLEQHMRLHAITHINVKPVTCEICQRAFANRVYLRNHTKTHVDPKMRERYKCATAKDLEANEEVTDHVVVEKPNRKEISDELASFPEQLEPFEEHEIATETLAYASEIDSETPLSLATRPTDKKSLKPGSSSRRPRVIYECEICGKSTRKRLQHVRHRRVHEKASIGHCSQCEISFPNEEQLRKHVIKFTRTLFGTVRKFGDTRRFFALTRAMNRSECRNKRRKGTPSRASLVEFLHEEKRRDRTRSPASRSSSDAVKRELPKKLATQDVEAAEESSRAFPRKGSLAEANVESSMPERSREIVKDTYKYRQRHSPDELYGMAMLEKLDLMRKTVTKPVPKKRKRTPSNFGLPEAIAVAPKMEKMVIAEIKEEFVVDDEDEQEDLPLAYNCSSCGIFFANQELMDKHEFEHHSSKKKRQQKNACNQCGRVFRTSVTLRKHMKIHTGRKRKVPKKQQKREIKDEYTCDVCNKVFRHKSNYYKHRARHRDENLACNHCPKKFRLHRDLKRHEKTHFYPSYVCKECDYETTLLTALSIHVGKQHSNPADVPYKCNECDKSFRRPIDLQEHYNVHSGEKPFACQQCGEAFNLRRQLTAHFRRAHPEMKPDKVTSTTCDICGRVLSTKRSLSRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRLHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCKICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -