Oell000938.1
Basic Information
- Insect
- Ophion ellenae
- Gene Symbol
- -
- Assembly
- GCA_963210295.1
- Location
- OY723385.1:17918263-17924570[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.6e-06 0.0006 20.9 1.5 1 23 350 372 350 372 0.98 2 15 2.1e-06 0.00027 22.1 1.1 1 23 378 401 378 401 0.95 3 15 0.0061 0.79 11.1 0.9 1 23 407 429 407 429 0.98 4 15 0.0023 0.3 12.5 4.5 1 23 435 457 435 457 0.96 5 15 0.00068 0.088 14.1 4.1 1 23 463 485 463 485 0.98 6 15 0.00044 0.057 14.7 1.0 1 23 491 513 491 513 0.98 7 15 0.00015 0.02 16.2 1.2 1 20 577 596 577 598 0.95 8 15 0.0091 1.2 10.6 0.5 1 20 635 654 635 656 0.95 9 15 0.00083 0.11 13.9 0.7 1 23 689 711 689 711 0.98 10 15 1.4e-05 0.0018 19.5 1.6 1 23 717 740 717 740 0.97 11 15 1e-05 0.0013 19.9 1.2 1 23 746 768 746 768 0.98 12 15 2.2e-07 2.8e-05 25.1 1.2 1 23 774 796 774 796 0.98 13 15 0.0003 0.038 15.3 0.7 1 23 802 824 802 824 0.98 14 15 5.7e-05 0.0074 17.5 1.1 1 23 830 852 830 852 0.96 15 15 0.00086 0.11 13.8 0.3 2 21 859 878 858 879 0.94
Sequence Information
- Coding Sequence
- ATGCTTCTATCCCTCCATCTCTGTCCCACCTTCATGTTCGTTACGCGGATATTTATTGAGTTCGAAACACTGTTAAAAGGGCCAGGAAAAGGCACTAGTCCTCGACAACTAGTGGCGGCGCTGGGACCGAAATTTGCCACGCTACTGATGCATCTCATCGCGGCTGCCAGCAttagagtttccagacctgtatACGAAATCGAACCGTACGAAGCCGGGGATTCCGTACAGACCAAGGGAAATATCCTGCACAACGAAATGGCCGAAACGTCCCGCCCTGACGAGAGAATCGAGTCGAGGACAAAGGCCAGCGGCTGGGCCGACATCTGTAGACTTTGCGCTAAAACGAATGATCACATCATACCGATATTCGAGGCGGAAGGAGCGCAGCATGAATTGAgcgacaaaattcacaaatatcTGCCAATTCGGGTCGCCGAATCGGACATTCTGCCGATTCAATTGTGCTACCATTGCGCAGCTACGATCCTCGCCTGGCACGAGCTTCTGGAGGGCTGCTTGGACGCACAGAAACAACTCGCTGAGATGCGATCCGAACAAACTTCCAGAGAACAGAGTCGATCGAGAGGCGGTGAAGACTTCAGTGAAGAGGTGGAGGATCCTGACCAGAGGTGCATCGATAAGAAAGATTCCGGCACGACCCAGACTGGAGAAACGGAACAGTCAGGCGAAGACATGAAACCAAGGTTCGATAGAGCCGAGGAGACATTAAGACTGTTCCTCGACAAGCAGAATGTGTGTCGAAGTTCGAGAAGGATAAAGCATGAAATTAGCCATGTCGCATTTGACAGAAGAGAAGAGAGGCAAGATGATTTGCGAGAGGAAAATGTCGCGATTTGCGAAAACTCTATGGAGCCCGCAAACGAGGATCATCACGACGAGGACACGGAAATTTCAAAAGATGGGAAATCCTTGCTGCGCTCGAAGTTGCGTCTAGATTACGAAGGGTCCATCCTCGGAACGAACTGTACGACGTGTCGCGAAGAATCGGGAAAGCGCGAAAACTCATCGACGGCGAAAAAATCGTTCAAATGCGCTGAGTGTTCGAAGATCTTTCGTTTCAAGGATTCGCTGACGCGTCACGAGCGAATCCATCGCGACGAAAGACCCTTCACTTGTCACGTGTGCGGCAAACAATTTCGCGACTCCGGCGGCCTGTCGCGACACCTCAAAGACGTCCACGCCAAATTGAAAAAGTTCACGTGCGACATATGCGCCAATAGTTTTTCCTCGAAAGCAACGCGCGACGATCATCGCCGAACGCACACGGGCGAGAGGCCTTACAATTGCGATAATTGCAAAAAGTCGTTTAAGTCACGCGCCTGCCTCTACATTCACAGTAAACTTCACACTGACAAATTTCCGTATCGTTGCGTCCATTGCGAGAAAAAATTTCGCCGACGCCAGGAGATGCTCCTACATCTCACGACTCACACCGGCGAGAGGAATTACAGTTGCGACGTGTGCTCCCGAAGGTTTCGCGTCAAGACCGAGGTGGCAAGGCACAAATTGACGCACTCGGACGAAAAACCATTCGACGCAACGGCGGACGTGAGATTCCAAAAATGCCTGAAAACAGAGGCGACGAGGATAACGCGGGCGCGAAGAGTCTTCGCGTCTCGAGAGCAACCATCGAAGCTGTCGATGGTGAGGGAGGAAGCCGCGCCGCCGTTGGGGAGAAGCAAGAACGCGACAAGTCAGAGCGCATTTTCGTGCGACACGTGCACGAGGCTATTCAAGAGAGAAAGTAACCTGAAGAGGCATCGCGCGTATTGTCGCGTGAAGGAAGTACCGAAGTCCGAGAGAGATAACGAGTATTATCGCACAGGGCGCGAATCCAACTCGCCTTGCGATGACGAAAGTTCACGCGAAATGCGAAATTATCGTTGCGCTCGTTGCGATTACAGAACGAGGAGGAAGCGACTCTTGAAGCTCCACGTGAGCGAGTGTAACGAGAAAGCGGGAGCGAAtaacgaggggaaaaaaaatcgcgacaaagATATCATCGTAAGAGCAAGAATGGAGGCGAACGGTCGTGTATACTATCACTGCGAGGACTGCGGAAAAAATCTTTTCTCCCCTTACACGTTCGCTTGGCACGTGAAAATTCACACGGGCGAGAGATCGTTCACCTGTCACCTGTGTGGCAAACAATTTCGCGTCAATCAGGGCCTGGCCCGCCATCTGCGCGAGACCCACGCCGGCATAAAAAACTTCTCCTGCGACGTTTGTTCTCGTTCAttctcgacgaaacgcaacGTCGAGGATCATCGACGCATACACACCGGCGAACGACCGTTCGTCTGTAACGTGTGCGGCAAAACTTTCAAGCAAAAGGCCTCGCTCTTTGTCCACAACCGCACGCACACAGACTCCTTTCCGTTCAAATGTAGCTACTGTAATCAGGGATTTCGCACGAGGCCGCCTCTCGTCGTGCATCTCACCAAACACACCGGCGAGAAGCCTCACATCTGCGACATATGCGAACGTGCTTTTCGCATCAAGTACGAGCTCAAGCGCCATCGCCTTGTACACTCGGACGAGAAACCGTGGCGGTGCTCCGATTGCGGCTCGGGCTTCAGACAGAAACGATATCTCGTTAATCACAGAAAAGTCAATTGTGGATGTGCGAAAGATACGACTAATTCGTGA
- Protein Sequence
- MLLSLHLCPTFMFVTRIFIEFETLLKGPGKGTSPRQLVAALGPKFATLLMHLIAAASIRVSRPVYEIEPYEAGDSVQTKGNILHNEMAETSRPDERIESRTKASGWADICRLCAKTNDHIIPIFEAEGAQHELSDKIHKYLPIRVAESDILPIQLCYHCAATILAWHELLEGCLDAQKQLAEMRSEQTSREQSRSRGGEDFSEEVEDPDQRCIDKKDSGTTQTGETEQSGEDMKPRFDRAEETLRLFLDKQNVCRSSRRIKHEISHVAFDRREERQDDLREENVAICENSMEPANEDHHDEDTEISKDGKSLLRSKLRLDYEGSILGTNCTTCREESGKRENSSTAKKSFKCAECSKIFRFKDSLTRHERIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKKFTCDICANSFSSKATRDDHRRTHTGERPYNCDNCKKSFKSRACLYIHSKLHTDKFPYRCVHCEKKFRRRQEMLLHLTTHTGERNYSCDVCSRRFRVKTEVARHKLTHSDEKPFDATADVRFQKCLKTEATRITRARRVFASREQPSKLSMVREEAAPPLGRSKNATSQSAFSCDTCTRLFKRESNLKRHRAYCRVKEVPKSERDNEYYRTGRESNSPCDDESSREMRNYRCARCDYRTRRKRLLKLHVSECNEKAGANNEGKKNRDKDIIVRARMEANGRVYYHCEDCGKNLFSPYTFAWHVKIHTGERSFTCHLCGKQFRVNQGLARHLRETHAGIKNFSCDVCSRSFSTKRNVEDHRRIHTGERPFVCNVCGKTFKQKASLFVHNRTHTDSFPFKCSYCNQGFRTRPPLVVHLTKHTGEKPHICDICERAFRIKYELKRHRLVHSDEKPWRCSDCGSGFRQKRYLVNHRKVNCGCAKDTTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -