Ocos004166.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ophion costatus
Gene Symbol
-
Assembly
GCA_951751655.1
Location
OX632356.1:50804613-50818845[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 7.8 9e+02 1.2 0.4 3 20 612 629 610 630 0.90
2 10 7.4 8.5e+02 1.3 2.2 1 23 638 661 638 661 0.96
3 10 6.8e-06 0.00078 20.3 0.3 1 23 667 689 667 689 0.99
4 10 3.4 3.9e+02 2.4 0.4 1 23 695 717 695 717 0.95
5 10 7e-06 0.0008 20.3 0.2 2 23 724 745 723 745 0.96
6 10 0.13 15 6.8 0.9 3 23 754 775 753 775 0.93
7 10 2.3e-06 0.00026 21.8 2.5 1 23 779 801 779 801 0.98
8 10 0.49 56 5.0 4.6 1 23 806 828 806 828 0.98
9 10 6.5e-07 7.4e-05 23.5 0.3 1 23 834 856 834 856 0.98
10 10 0.00091 0.1 13.6 3.3 1 21 861 881 861 882 0.94

Sequence Information

Coding Sequence
ATGCCGCCTTGCGAAatcaagCAAGCCGATGGATTGTCCCACATAGTCTGCGTCAAGTGCCTCGGAACTTTGGAATTTCTCTGCGACTTTCACGAACAATGTCACAGGACCCAGGTGATATTGGCAGAAGCGAAGcggAAGTCCGAAAAAAGCGAGATAACACCCACGCCGATGGAAATATCTGACGATTCGGAGTCCGACAAGGAAAACTCCTCGCCGATAGTCAAGTCCGGTATCAAGAGAAAGAAGCAGGTTAATCCGGAAATCCAAAAGCCCGCAAAAATTCAGAACTCGGCGGTGAATAAATTCGAGCAAACCAAAAAGACCAAAGTCAACGAGCCGGAAGTGAATAAAATCGAGCTGTCCAAAGGTATCAAAATCGACGTGCCGGAATTAAATAAAATCGAGCAAACCAAAAAGGCAAAAATCAACGAGTCACAAATTAATAAAATCGACTTGCCCGAAGCGACCAAAATCGGCGAGCCGGAAGTAAATAAAATCGAGCaaacgaaaaacgcaaaaatcaGCGATCCGCAAGTGAATAAAATCGAGTTGTCCAAAGCGATGAAAATCGTCGAGCCGGAAGTAAATAAAATCGATCAGTCCAAAAAGGCAAAAATCAAGAAGCCGGAAATAAACAAAATCGAGTTGTCCAAAGAGACCAAATTCGGTGAGCCGGAATTAAATAAAATCGAGCAGTCCAAAAAGGCCAAAATCAAGCCGGAGGTGAATAAAATCGAGTTGTCCAAAGAGATGAAAATCAGCGAGGCGAACGACACTGAAATCGAGCTGTCCAAAGAGACGAAAATCAACGAGCCGGAAGTGAACAAAACCgttcaaaccaaacaaaccaaaatcgCCGAGCCGCAAATGAACAAAATCGTTCGAACCAAAGTGCCAAAAATCAACGAGCCGGAGTCAAAAAGAAATTCGCACCCGAAAATCCTCAAAACCATGATGCCGGAAGTGACTAAGATCCCGAGGAAGATCAAAATCGAAGACCGGAAGTTGCGAAGAACGGAGAAGAAGAAAGACCAGCGGGTGCAGAGGAAAATTCCGGACATGTTCGTTACGAAGAATTCCGGAAGTACCGCGACGAGTGTGGTCTCGAAGTCGAAAATCGTTGAGAGCAGCGTGTCCGTGGAGGTCGGATCAACGGAGGCAGCCGACGGTCACCGTGGTGCAATCGATGAAAGCAATCCAAAGTTATCGGAGAAGGGTACGATCGTAAAGCTGGAAAAGATGGAGAGCAGCGACGCCGCGGCGACGTCGAAGAAGGAAGTACTGAAGCCGAATAAAATCGTGTGGATTCCAGCCATGCTGAAACTGCCGGAAGGTGAGACTCTCGAGTCGCCGTGTGCCAAAGGGTGCGAGGATGCTCCTGCGGCTATTGGCAAAATCGCGTGGATATCGAGTACGCCGCGTACGCCGGAAGTTGAGAGTCCGAAGTCAGCGAGGACGTCGAAGCCTCACGAGGATTCTCCTCCGGCGGGAGACGAGGCGGGATCGGGAACGAGTGAGAAGATTTTCGACAAGAGGAAGGAGAGTGCCTCGATGGGACTTCCGGTTAAGCGAGTCCTCGAGAAATCGCACAACGCGAAGAGACGAGAGGCTCGAGTGAGGAATTGGAAGAGCAGCGCCAAGCCggaagaagaagacgaggacgacgaggaggacggtAGTTCGGGATCGAAGAAATTCGGCAAAATAACGGACCTGATAACGAGCGAGCAAAAAGTAGCGATCGAGAAGTTCTACGTTTGCGACATGACAGCGGTCGACGAGCGATTGGTCGGCGAGCAACTTGCCTTTCTCGAACGTAAAAAATACGGCTGCAAACTCTGCGCGGCCTCTTACACGAGACAGGACAAGTGTCAGGTCCACATATGGGGACACCTGGACATGAAGCCTTACCGCTGCACCGCCTGCGAATTCTCCACTGTCACCGTTAGCAACATACGCTGCCACGTGCGCAAAAGTCATCTCAAGATAAAGCCCTACGTCTGTGAGCTTTGCAACAAGCGTTACGTCACGGCTTTTCTCCTCGAGGAGCACATGAACACGCACACCGGATCGAGGCCCTACGCCTGTGGCGTTTGCGAATTCAAGAGCGCCAGTAGGCAGGTCCTCAGCTACCACAAGACTACCCACAAACCCGTCAAGGACATAACGTGCAACGTGTGCGGCAAAGAGTTTTACTCGAAGAGTCGTTTGCGCGCCCATTTGATCATCCACAACAAGGACAAGGCGGCCAACATGTGCAAATTATGCTCGATATACTTGTGCAATAGCGAGGCACTGCAGAGACACTACGCGAACGTCCACAACAAAGATTACGAGTGCAACGTTTGCGGCAAACGTTGCAAATCGAAGAAAGCCTTGAACAATCATCAAAACGTCCATTCGGCGGCGAAGCACAAGTGCACTCTGTGCTCGAACGTCTACAAGAGCAGCCACATACTGAAGGAGCATCTGCTGAAGCACGAGGGCATAAGGAAGTACAAATGCGGAGTGTGCCAAAAGGATTTCGCGCAGCAGTCCCATCTCGCCGCGCACATGGCTGTTCACAGCGACAGAAGATTTTGCTGTCCCGGATGCAACCGTCCCTTCAATCGTCACGACAACATGAAAATGCACACGAAACGGTGCGACGCTTTTTTGGCCAATCCAGAGCTCGCGACTGCATTGTCGGCGAGAAAAAGTCGCGGCAAGAGTCCCCCGAAGGAAACGAGAAAAGATATCGAACCGGAGAAAAAAACGGCCCCGTCATCGGAGCCCGAATACACCAAGACTGATTTTAACGCGTACGAGGAGAACGAGAGATCGATCGAGACACCAAATACGCCGCAATCGAGTGACGAACGTCGCGAAACTTTTACCACAATAATCGTCGAGAACACGATCCCATGTACCTGA
Protein Sequence
MPPCEIKQADGLSHIVCVKCLGTLEFLCDFHEQCHRTQVILAEAKRKSEKSEITPTPMEISDDSESDKENSSPIVKSGIKRKKQVNPEIQKPAKIQNSAVNKFEQTKKTKVNEPEVNKIELSKGIKIDVPELNKIEQTKKAKINESQINKIDLPEATKIGEPEVNKIEQTKNAKISDPQVNKIELSKAMKIVEPEVNKIDQSKKAKIKKPEINKIELSKETKFGEPELNKIEQSKKAKIKPEVNKIELSKEMKISEANDTEIELSKETKINEPEVNKTVQTKQTKIAEPQMNKIVRTKVPKINEPESKRNSHPKILKTMMPEVTKIPRKIKIEDRKLRRTEKKKDQRVQRKIPDMFVTKNSGSTATSVVSKSKIVESSVSVEVGSTEAADGHRGAIDESNPKLSEKGTIVKLEKMESSDAAATSKKEVLKPNKIVWIPAMLKLPEGETLESPCAKGCEDAPAAIGKIAWISSTPRTPEVESPKSARTSKPHEDSPPAGDEAGSGTSEKIFDKRKESASMGLPVKRVLEKSHNAKRREARVRNWKSSAKPEEEDEDDEEDGSSGSKKFGKITDLITSEQKVAIEKFYVCDMTAVDERLVGEQLAFLERKKYGCKLCAASYTRQDKCQVHIWGHLDMKPYRCTACEFSTVTVSNIRCHVRKSHLKIKPYVCELCNKRYVTAFLLEEHMNTHTGSRPYACGVCEFKSASRQVLSYHKTTHKPVKDITCNVCGKEFYSKSRLRAHLIIHNKDKAANMCKLCSIYLCNSEALQRHYANVHNKDYECNVCGKRCKSKKALNNHQNVHSAAKHKCTLCSNVYKSSHILKEHLLKHEGIRKYKCGVCQKDFAQQSHLAAHMAVHSDRRFCCPGCNRPFNRHDNMKMHTKRCDAFLANPELATALSARKSRGKSPPKETRKDIEPEKKTAPSSEPEYTKTDFNAYEENERSIETPNTPQSSDERRETFTTIIVENTIPCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-