Ocos011348.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- -
- Assembly
- GCA_951751655.1
- Location
- OX632360.1:6671579-6680697[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00049 0.056 14.5 0.3 1 21 23 43 23 44 0.95 2 12 0.012 1.3 10.1 5.5 1 23 52 75 52 75 0.95 3 12 0.0002 0.023 15.7 0.0 1 21 156 176 156 177 0.96 4 12 0.0019 0.22 12.6 6.6 1 23 185 209 185 209 0.91 5 12 0.014 1.6 9.9 1.2 1 16 237 252 237 258 0.85 6 12 0.29 33 5.7 0.7 1 23 275 298 275 298 0.93 7 12 0.061 7.1 7.8 0.3 1 20 304 323 304 325 0.93 8 12 0.25 28 6.0 7.0 1 22 334 355 334 358 0.90 9 12 0.1 12 7.2 0.2 1 11 390 400 390 407 0.83 10 12 0.63 72 4.7 0.7 1 18 419 436 419 436 0.95 11 12 2.4e-07 2.8e-05 24.9 1.6 1 21 482 502 482 503 0.96 12 12 2e-05 0.0023 18.8 1.7 1 23 511 534 511 534 0.89
Sequence Information
- Coding Sequence
- ATGCACTACGAACAGTTAGCCTCGCGACACACGGCGGAGCTAACGACCACCAAGAATGAGAGAAAGTTTCCCTGCGAAAATTGCGGCAAAGCTTACAAGTGGAAGGAATCGTTGTTCAAGCATCGACGCGTCGAGTGCGGCAAAACTCCGCAATTCGCTTGCGAGATATGCGCTCATCGTTTCATGCACAAGCATCATCTCGTCAAGCACCTCGCGTCCATCCATCAGAGTACTCTCGTCAACGACAATGACGCTGGAAGAAGAAGTCCGAAGGAACATCTCGTCCGATCCTTCGCCGAAACGCCGAATCGCTCGTTGATCATTTTGACACCAGCGTCATTTTTGTGTTCGCAGAGCTGGCTGCGAACGTGGAAAGCACACGATGAGTCTCGCGGCTCCGACACCGATCGCAACGATGACATCTTTTTCGCGACGAGCTATCGTCAGTCTGCTCGGGCCAAGTCGTACGTGTGTACCGGATGCGGCAACGCTTACGCCGTCAAAACGTCACTCTGGCGACATCAGCGAATCGAGTGTGGTCGGGCACCCCAGTTCACCTGTACGATCTGCGACTCGCGCTTCATGCACAAGCATCATCTGAACAATCATCTAAATTCGAATTCTCACTCGCAGAAGGCGTCCAGAGCCTTCCAACTGAAGATCGAAGACGTGGTCGGGCAAAGTTTCGAGCTGTTCTCGCGCCAATCGTACGCTTGCGAGAGATgcggaaagagtttcgcgaCGAGGCGCTCGATGCTGTGTCATCGGACTCGCACTTGCCGGAAGATGACGATGTGCCGAAGCGACGTGGAACTTCGAAGATTCGCTTGCGCTCTCTGCGAGGCGCGCTTCCTGCGCAAGCAACATCTCGTCAGTCACGCGAAATGGTACCACACCGACAAAAAGGCGTACGTTTGCGAGACCTGCCATCGGGCTTACGGCTGGGCGACATCGCTCCGTCGGCATCGACTCTACGAGTGCGGCAATAAAttgggcagcttcagttgcgaCGTTTGCTGCACGAGCTTCGGCCACAAGCATCATCTCGTCAGGCATCTAACGAGCGTTCAGCACTTGAACAGAAGCTTGGAAAATGCCATCCACGGGGAAAACACGACGAGCCACACGGGAAATGACTTCGTTTACAAATGGTCACCCGACAAACCCTACGCTTGCTCGACCTGTGGTAAATCATACTCGTGGAAAGTATCGCTCTCGCGTAACGTGCGCGACGAGTGCGGCAAGCCACCGCAATATTCCTGTAACTTTTGCGCCAAGTGGTTCGGGTCGCGCAGCAACCTTCGCCGCCGCACGGACACCCCGCACTACGACGAACTAACGAAGTCCATCGGGGTGAAATCTTCGAACGTCTCCACGAGCGCAGAGAGATCAAGACTGCCCGGGAAGCACGACGGCTCAAGACAGAAGCAATTTTGGCGCCCGTTCCCCTGTCACACTTGTGGGAAGTCGTACACCCGGAAGGACACACTGAGGCGGCATCTGCGCGACGAGTGCGGCAAGAATCCCCAATACATATGCTACGTGTGCAAGAAAGGCTTCAAGCAAAAGTCCAATTTTCAAAGGCACAACGCGAACGTCCATGGCTTTAGGTTCTGA
- Protein Sequence
- MHYEQLASRHTAELTTTKNERKFPCENCGKAYKWKESLFKHRRVECGKTPQFACEICAHRFMHKHHLVKHLASIHQSTLVNDNDAGRRSPKEHLVRSFAETPNRSLIILTPASFLCSQSWLRTWKAHDESRGSDTDRNDDIFFATSYRQSARAKSYVCTGCGNAYAVKTSLWRHQRIECGRAPQFTCTICDSRFMHKHHLNNHLNSNSHSQKASRAFQLKIEDVVGQSFELFSRQSYACERCGKSFATRRSMLCHRTRTCRKMTMCRSDVELRRFACALCEARFLRKQHLVSHAKWYHTDKKAYVCETCHRAYGWATSLRRHRLYECGNKLGSFSCDVCCTSFGHKHHLVRHLTSVQHLNRSLENAIHGENTTSHTGNDFVYKWSPDKPYACSTCGKSYSWKVSLSRNVRDECGKPPQYSCNFCAKWFGSRSNLRRRTDTPHYDELTKSIGVKSSNVSTSAERSRLPGKHDGSRQKQFWRPFPCHTCGKSYTRKDTLRRHLRDECGKNPQYICYVCKKGFKQKSNFQRHNANVHGFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01102288;
- 90% Identity
- -
- 80% Identity
- -