Basic Information

Insect: Ophion costatus
Gene Symbol: -
Assembly: GCA_951751655.1
Location: OX632368.1:15564065-15566614[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00027 0.031 15.3 1.2 1 23 249 271 249 271 0.98

2 7 5.8e-05 0.0066 17.4 1.3 1 23 277 299 277 299 0.96

3 7 3.5e-06 0.0004 21.2 1.9 1 19 305 323 305 327 0.95

4 7 9.5e-05 0.011 16.7 2.2 1 23 333 355 333 355 0.98

5 7 0.00026 0.03 15.3 4.3 1 23 361 383 361 383 0.99

6 7 2.7e-07 3.1e-05 24.7 0.7 1 23 389 411 389 411 0.98

7 7 0.0035 0.4 11.8 1.1 1 23 426 448 426 448 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00027	0.031	15.3	1.2	1	23	249	271	249	271	0.98
2	7	5.8e-05	0.0066	17.4	1.3	1	23	277	299	277	299	0.96
3	7	3.5e-06	0.0004	21.2	1.9	1	19	305	323	305	327	0.95
4	7	9.5e-05	0.011	16.7	2.2	1	23	333	355	333	355	0.98
5	7	0.00026	0.03	15.3	4.3	1	23	361	383	361	383	0.99
6	7	2.7e-07	3.1e-05	24.7	0.7	1	23	389	411	389	411	0.98
7	7	0.0035	0.4	11.8	1.1	1	23	426	448	426	448	0.97

Sequence Information

Coding Sequence: ATGCAAAGTACCGCGACTCCGGCGGTCGGCGGTAGGAGCGCAGCGGCCGAAGTTGCAGCGTCCAGCTGTCTACTCTGCGACGCTCGTCTCGACGTCGCCGGCTCGCTGAACATATTCGACACCTCGCTGCCGAGAAACGGCGAACTGCTCGCCAGTTACGTGCTGAGGGTGTTGCGTCCTGCAGTCGTGGATTTGCGCAGCTCCCACGTATGCGTGCGCTGTTACGAGCTGTTCAGAACTCTGGAACAGGCCCAGTGGACCGCGAGCAACGCGAAGTGCGAGATTTTCAGGGTTTATCGCAGCGGAGCGGGTCAGGGGAGGATCCTTCCGGAGGAGATCCACCAGACGTGCGAGGACGATCCTCCCAATGGGAGGAACGTTGCGACGACTTTGGACGTGGGAAGCTTGGAGGCTAAGCGCGAGAACAACGTCAAGAGCCTCGAGGAGGATGCGTGCGAGTCGCCACACGCACCGAAGGATGATCCCACCCTCCGTCATTTCGACAACGACTACAGAGCCGAGGCGAGCGCGGTCGTCGTGGAAAACACGCCGAAAGCCGCGCACGTCTACAAGCCCGAAGACTCCGCCAGTGCGTTCGTTTCcgaagaattttccaaaaaagacGAAAGCCCCAAAGGGATTTCCAGCCACGAGATCGCCGAAGATCCCAACGACGAGAAGCCGCGCGCCCCGGGCACTTGGAGATCCGGCAGGGTATCGAAGTACAGCCAGAAACCGCTGAAGTACAGTTGCACGACTTGCGACAAGAAGTGGCGCACCTCAGCCGAGCTCAAGACCCACGTCAAGTCTCACTCGAGTCTGCGGCCTTACATGTGCGAGAAGTGCGGCCAAGCTTACAAGCACAAACACGCCCTTGAGATTCACGTCGGCATGCACAACGGCGTTAGTCCCTTCAAGTGCAACGTCTGCGACAAGTGCTTCACCCAGAAGGGCGCCCTCATGAGGCACTCGCCGATGCACACCGGCGAGACTCCCTACCAGTGCGAACTGTGCGGCAAACGTTTCGTTCATTATACGTCCTACAACATGCACGCCCTCTCTCATACCGGCAAAAAGTCGTACCAGTGCCACGTCTGCAATCTCTCGCTACTCTCGACCTCACACTTGAAACGCCATATGAGAGTCCACACGGGCGAAAAGCCCTACAGCTGTTCACTTTGCGGCAAGAGCTTCGCCGAGAGATACAATTTGTTCGCACATCAGAAGATTCACGATCCTAATGAGATAATGGCAAGAGCAGCCAAGAAAATGCCCTTCAAGTGCGACCGTTGCGACGAGTATttcgacaaaaaacaaaagttggcCGAGCACACGCTGGAGCACGGGAGGAACGAGGTGACGAGCCAGAAAAGTTGGACGGGCCAAACGATCATGGTGAATCCGTCGGGACGACAAGTCGAGGAATTGGCGAGATCGTCGACGAACGATCACGCGATGGAAGCGTGGCGTGAAATTGATTACGAAAAATGTGCAAGTTCGCAGATTGCGTCGCGTTTGCATCAGAGCGGCGATCTGATAACGCAGGAGTCCATTAGTGTAGTTATGGGTGGGGAGAATTACGAAAGATCGGTCGTGGTTCAAGCACCGAACGCGGCAAGTATCGCCGGAATCGATGTCGCGCACACATGA
Protein Sequence: MQSTATPAVGGRSAAAEVAASSCLLCDARLDVAGSLNIFDTSLPRNGELLASYVLRVLRPAVVDLRSSHVCVRCYELFRTLEQAQWTASNAKCEIFRVYRSGAGQGRILPEEIHQTCEDDPPNGRNVATTLDVGSLEAKRENNVKSLEEDACESPHAPKDDPTLRHFDNDYRAEASAVVVENTPKAAHVYKPEDSASAFVSEEFSKKDESPKGISSHEIAEDPNDEKPRAPGTWRSGRVSKYSQKPLKYSCTTCDKKWRTSAELKTHVKSHSSLRPYMCEKCGQAYKHKHALEIHVGMHNGVSPFKCNVCDKCFTQKGALMRHSPMHTGETPYQCELCGKRFVHYTSYNMHALSHTGKKSYQCHVCNLSLLSTSHLKRHMRVHTGEKPYSCSLCGKSFAERYNLFAHQKIHDPNEIMARAAKKMPFKCDRCDEYFDKKQKLAEHTLEHGRNEVTSQKSWTGQTIMVNPSGRQVEELARSSTNDHAMEAWREIDYEKCASSQIASRLHQSGDLITQESISVVMGGENYERSVVVQAPNAASIAGIDVAHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01101594;
90% Identity: iTF_01101594;
80% Identity: -