Ocos003680.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- -
- Assembly
- GCA_951751655.1
- Location
- OX632356.1:39283760-39285535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0034 0.39 11.8 0.9 1 23 67 90 67 90 0.93 2 12 0.071 8.1 7.7 1.0 1 23 154 177 154 177 0.95 3 12 0.0034 0.39 11.8 6.1 1 23 220 243 220 243 0.95 4 12 1.3 1.5e+02 3.7 2.9 2 23 291 313 290 313 0.95 5 12 0.00054 0.062 14.3 3.3 1 23 323 346 323 346 0.98 6 12 0.11 12 7.1 0.6 3 23 377 398 375 398 0.95 7 12 3e-05 0.0035 18.2 1.9 1 23 404 427 404 427 0.96 8 12 0.013 1.5 10.0 0.8 3 23 434 455 432 455 0.94 9 12 0.0013 0.15 13.1 1.5 1 23 460 483 460 483 0.97 10 12 2.1e-08 2.4e-06 28.2 0.4 2 23 490 511 489 511 0.97 11 12 1.3e-06 0.00015 22.5 0.5 1 23 517 539 517 539 0.98 12 12 6.8e-07 7.8e-05 23.4 0.1 1 23 545 567 545 567 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAGCCGAGAAGAACGAAGTGACCGTGATCGTATCAACGGTACCGGCGTGTACTTCCGCGTTGTGGAAATCTCCGGGTGATGAAGTCAACGGTGACATCTTGAATCCTGGCGGGATCGTGCGATCGTCGATAGGCTCGTCAAAGATGGCGGCCTCGTTCGATCGGGCGGACGGCAGCGTCGCGACCGATTGGCACGATTGTGACAAGTGCGGCTTTAAATTTCCCCTCGAGGGTATGCTCAATCGTCATCGAGTGATGAGCCACTCGTACGAGAGTACAGGCACGCGGTGGATAACGAGGAAGAAAGGAGCGTGGACGCCCGTCGACAAGTCGACGATTCACGAGCGACCCGtacgacaaaatggcggcaagtTACGGAACGACGAGGAACGAACGGTTCTTCCGGGATTGCTCGTCAAGACGGAAGTGACGTCGGCAACGTCACAGCCGCGTCACGTGTGCAACTTTTGCGAATTCGCTTGCGACGGGAGGGCCGAGCTCACGTCTCATCTCGCGAGTGAGcataatatattgatatttccGGACGTGACGACGAGCGTGAGATACGAAACGTGCGACTCGTCGGACGATCCCCGTacacgtcgtcgtcgtcgccgtgaAAATATCCCGACGAACGTCCAAGACGAGATCCACGtttgcgagtattgcgactttTCGTGCAAAAAGCGCAGCACCCTTACGTCCCACGTGAGCAGAAAGCATCGTCGGGAGACGACAGCGAGCGCGACGAGGCTCCCTGAGGTCGACGGGGTGAACGTCGATCGCGAGTACGACGACCGGGACGAGAAGTCGACCGATGCGGAACGGCTGAATGCGAGCAAAAGCCAAATGAGCAATGTCCTGAGCTGCAACAGTTGCAGCTTCGAGTCGTCGAACAAACGAACGATGAGCTCGCACAAGCGTCGTCAACACACGATAAAGCCATCGGCCGATGAGATTTATCGTTGCAACGAGTGCGACTTCAAGACTGCGAAAAAGACCTCGCTCTATTCGCACATGAAGAGAAAGCACAAATGTGCTAAATCGTCCTACGAGGACGAGGATTACggcgacgaggaggacgagggaAGAAAGCCAACGCCCACGGTCGAATTGTTCGGTTGCGGTCAATGCGACTACAAGAACAAGAACAAGTACGAGCTCAAGGTACACGTAGCCCGCAAACACACGGACGACTTCAAATTCACTTGCGAAACATGCTCCAAGAAGTTCAAGGTCAAGGGCGATCTGACGAATCACGTGAGATTCAGCCATCGCGAGCAACCGGTAATCTGCGATGTTTGCGGCAAAACGTGCCTCAACAGTAATTCCCTCTACGTGCACCAAAAGTTCGCCCATTACAAGGCCAAATACGAGTGCCACATGTGCAAGAGACGTATGGTCAGCCAGGAGAATCTCGACGAGCACATGCTCCGACAACACGAGAAACGGGAGAGCGTCGTTTGCGAGGAATGCGGCAAAACGTTTTCCCGCAACTCACGACTAAAGATACACATGAGGATACACACGGGTGATCGGCCGTACGAGTGTCAAGTTTGCAATCGGAGCTTCGCTAGGAGAACCGCCCTCAAGCAACACTTGCTCATACACACCGGCGTTAGGCCTTACGTTTGCGACGTTTGCGGCAAAGCTTTCACGCAGAAGCCAGGCCTCATAAGCCACAGGAAGTCACATCCGGGACCCCTTCCACCATTGCCCAGAGTTCGCATCGATCACATACTCAATGATGTACTCAAACCCAATTCATGA
- Protein Sequence
- MAEAEKNEVTVIVSTVPACTSALWKSPGDEVNGDILNPGGIVRSSIGSSKMAASFDRADGSVATDWHDCDKCGFKFPLEGMLNRHRVMSHSYESTGTRWITRKKGAWTPVDKSTIHERPVRQNGGKLRNDEERTVLPGLLVKTEVTSATSQPRHVCNFCEFACDGRAELTSHLASEHNILIFPDVTTSVRYETCDSSDDPRTRRRRRRENIPTNVQDEIHVCEYCDFSCKKRSTLTSHVSRKHRRETTASATRLPEVDGVNVDREYDDRDEKSTDAERLNASKSQMSNVLSCNSCSFESSNKRTMSSHKRRQHTIKPSADEIYRCNECDFKTAKKTSLYSHMKRKHKCAKSSYEDEDYGDEEDEGRKPTPTVELFGCGQCDYKNKNKYELKVHVARKHTDDFKFTCETCSKKFKVKGDLTNHVRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECHMCKRRMVSQENLDEHMLRQHEKRESVVCEECGKTFSRNSRLKIHMRIHTGDRPYECQVCNRSFARRTALKQHLLIHTGVRPYVCDVCGKAFTQKPGLISHRKSHPGPLPPLPRVRIDHILNDVLKPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01103028; iTF_01102276; iTF_01101552; iTF_01103025;
- 90% Identity
- iTF_01103025;
- 80% Identity
- -