Ocos003683.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- -
- Assembly
- GCA_951751655.1
- Location
- OX632356.1:39300626-39301774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0069 0.79 10.8 2.2 1 23 109 131 109 131 0.96 2 9 1.9e-07 2.1e-05 25.2 1.9 1 23 137 159 137 159 0.97 3 9 0.0013 0.15 13.1 0.3 1 23 164 187 164 187 0.97 4 9 7.2e-06 0.00082 20.2 2.8 1 23 193 215 193 215 0.98 5 9 9.3e-06 0.0011 19.9 0.1 1 23 221 244 221 244 0.95 6 9 9.4e-05 0.011 16.7 0.5 1 23 255 277 255 277 0.96 7 9 1.2e-05 0.0014 19.5 0.2 1 23 281 303 281 303 0.95 8 9 1.4e-06 0.00016 22.5 0.5 1 23 309 331 309 331 0.97 9 9 1.6e-06 0.00018 22.3 2.1 1 23 337 359 337 359 0.98
Sequence Information
- Coding Sequence
- ATGGACGATTTCTATCGAATACCGAAATCACTGTGCTACTTGATGGTGAAAGAACCGCCGCGGGGGAGCGGAGTAACCAGGGATTCTCGTGACGCGACGAGTCGACGAGCGCAGGTCCCGATGAACGACGCGGACGAGAAGACGACGGACCGGAGCTTCGTCAGGTCGGAATCGTTCGAGGAGCAAACGAAGATGGCAAACGACGCAAAGTCGAATGATGAGAAACTCCCGGATCTCGACGACGTTTCCCTGGCCGCGCGCAAGCGAGTTTACCGCGGCAGATCGAGGCAAAGAAAGTCCCTGACGAAGCCCCATTCCGTAGCTCACGAGTGCGAAACTTGCTCTCTGAAGTTCATTCTAAGGCGCGAGTACACGAGGCACATGGTGAATCACAGCACGCTTCGTTCGCACAAGTGTGACGTGTGCGGGAGAGCCTTCAAGAGAAAATCCGAATTGAAGTCTCACGTGCAGTTGCACAGTGGTATCAAGTACAATTGCGACGAGTGCGATTTCGTGACGTCGAGCAAAGTCGCGGTGAGATATCACGTGAGGCGTATGCATCAGCGTGACTTTCGCTACAAATGCGAGGAGTGCGACAAGTCGTTCATGTCGAATTGCGCATTGAAGGATCATCAGACGAGTCACTCGAGCACCAAGAGCTTCATCTGTGAGATATGCGGCAAGGCATATATCCAAAAGTCCTATCTCGGAGCTCACAAGCGAGCGGTACACGGCGTAGTGCAAAAAGTCCTCGTCAAGGATCATCGATGCAACGTATGCGACAAGAGCTTCGTGTCCGAGTACATACTGCAGAATCACATTGGCATACACTCGCGAAAGTTTCTCTGTCCGCAGTGCGGCAAAGAATTCGCCAACAATCAATCGCTCGCGATGCACAATCGCGTGCACACCGGTGAACGTCCACATTCGTGCAAAGTATGCGGAAAATCGTTCGTTAGGTCGAACGCTCTGGCGGTACACGAGCTCACCCATACCGGCAAGAGGCCCTACGTGTGCGATCTCTGCGGCAGAAACTTTACACAGCGTAGCACCATGACGAGACACAGAAAGAACCATCCCGGCACTCATCCACCACCACCGCCCACGCTCTTGAGCAAACTCGACAATTCGACGGATTCGAATTCCTGA
- Protein Sequence
- MDDFYRIPKSLCYLMVKEPPRGSGVTRDSRDATSRRAQVPMNDADEKTTDRSFVRSESFEEQTKMANDAKSNDEKLPDLDDVSLAARKRVYRGRSRQRKSLTKPHSVAHECETCSLKFILRREYTRHMVNHSTLRSHKCDVCGRAFKRKSELKSHVQLHSGIKYNCDECDFVTSSKVAVRYHVRRMHQRDFRYKCEECDKSFMSNCALKDHQTSHSSTKSFICEICGKAYIQKSYLGAHKRAVHGVVQKVLVKDHRCNVCDKSFVSEYILQNHIGIHSRKFLCPQCGKEFANNQSLAMHNRVHTGERPHSCKVCGKSFVRSNALAVHELTHTGKRPYVCDLCGRNFTQRSTMTRHRKNHPGTHPPPPPTLLSKLDNSTDSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01103018;
- 90% Identity
- -
- 80% Identity
- -