Basic Information

Insect: Ophion costatus
Gene Symbol: -
Assembly: GCA_951751655.1
Location: OX632356.1:36515977-36518697[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.041 4.7 8.4 0.0 1 23 316 338 316 338 0.95

2 12 0.56 64 4.8 1.2 1 19 339 357 339 359 0.92

3 12 4.9e-06 0.00057 20.7 1.5 2 23 433 454 432 454 0.97

4 12 0.0001 0.012 16.6 0.2 1 23 460 482 460 482 0.98

5 12 0.00041 0.048 14.7 2.4 1 23 488 510 488 510 0.98

6 12 7.4e-06 0.00085 20.2 1.3 1 23 516 538 516 538 0.98

7 12 0.0003 0.034 15.1 1.0 1 23 544 566 544 566 0.98

8 12 1.5e-07 1.7e-05 25.5 0.5 1 23 574 596 574 596 0.98

9 12 0.0049 0.56 11.3 0.2 1 23 602 624 602 624 0.94

10 12 1.5e-05 0.0018 19.2 2.2 1 23 630 652 630 652 0.98

11 12 2.2e-05 0.0025 18.7 0.6 1 23 658 680 658 680 0.98

12 12 0.0012 0.14 13.2 4.3 1 23 686 708 686 709 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.041	4.7	8.4	0.0	1	23	316	338	316	338	0.95
2	12	0.56	64	4.8	1.2	1	19	339	357	339	359	0.92
3	12	4.9e-06	0.00057	20.7	1.5	2	23	433	454	432	454	0.97
4	12	0.0001	0.012	16.6	0.2	1	23	460	482	460	482	0.98
5	12	0.00041	0.048	14.7	2.4	1	23	488	510	488	510	0.98
6	12	7.4e-06	0.00085	20.2	1.3	1	23	516	538	516	538	0.98
7	12	0.0003	0.034	15.1	1.0	1	23	544	566	544	566	0.98
8	12	1.5e-07	1.7e-05	25.5	0.5	1	23	574	596	574	596	0.98
9	12	0.0049	0.56	11.3	0.2	1	23	602	624	602	624	0.94
10	12	1.5e-05	0.0018	19.2	2.2	1	23	630	652	630	652	0.98
11	12	2.2e-05	0.0025	18.7	0.6	1	23	658	680	658	680	0.98
12	12	0.0012	0.14	13.2	4.3	1	23	686	708	686	709	0.95

Sequence Information

Coding Sequence: ATGAGTGATCAGTTGCCGAAGGTGGTTTGCGGTTCTTGCGCCTACAAGTTGGATCAGATGTTCGTGTTCCGCGAGAAGTGTTTGCACACGGAAGGCATGTTTATGGAAATGCTGAAGATGATAAAGGACGAAGACGGCAGATCGAGGCGTAATCGCGGTGAGGTTCGGGACATTCCTGTCATACAGAACGGTGTAGAAAGAATCCATGGGAACACGGAGAACGTGCGAAGATGCATGGACGAGATGCGCAATGGGGAATGCGTTTCTAGCGAAGTGGCGAACGACGCGTCGGTACACACGATGCAAGTTATGGACGAGATGGATTTGGCCGGTGGAGAACAGGTCGTCAGCCAAGAGGAGATCGAGTCCCAGGAAAATGATATCGAAGTTGCTGGTATTCATTGTCTGGACGGCGATACCGTGAGAATGGTCGACGAGCACATACGCGAGGTCTCGAATCACGAAATCGCCATGCATCTGGAGGGAGATATAACTGTCGTGGGAGATCTCACCGTTGATGGTCATCTTGATCAGCTTGGAATAAATTACGTGACTGCGATAGCGACGGAGAATCCGAGTCAGGAACAAATAGTCCATTACTGCGATAGCGTTAAATACGAGGCGGCGGACGTCAAGGAGGATTATCAGAGGCTACAGGAGAGATTAACCGTCGAGGTTCCATCGCATCCTATGAAAAATGATGTTGGGGCCAAGGTGTTTTCATCGTCGCAACGTGAAGCCGAGAGCGAGCTGGATGAGAGGATAATAAGCGAGACCGACGATCGTTCGACGTTGGAACGCTTGCACGACGAGAGCATTCCGTCAACGAGTCACGAGACGAGCAAGGAGTCCGGCATAATCGTGGAATACACGAAGCGAACGAAGGAAGCCCTGTTAGACAATATACTTAACAATCCGACCCTGGACGAGACGGGTTCGAGCTGGTACGTTTGTCCGTTCTGCAACGAGGCGGCGGACGAACCGAGCAGTCTCGCGGCACATTTCGAGCAGCATTTTTGCTGCTGCAACTGCGGTTTGTACTTCACGAGCGTCGAGGGACTGGCGCTTCACGCGGAACAGTGCGACTTTCAGAAGCGAGAGGAAGTGGACATCGAGGGAGAAGCGTTGCACGAGGAAGcggcggaggaggaggagaaggatGATCCAAAGTTTGCGCGGAACGGGGCTGAGGTCGGGTCCAAGCCGAGCACGAAAAACTCGTCGTCGGTTGCGGAGGCAGCGGACGAGGAGGAGGTAAAGAGGCAGTCGGGCACGCGGCAAAAGTGGACACCAAAGGTGTGCGCTCAGTGCGGCAAACAATATCGTACGAATTACAAGCTCCAGGAACACATGAGAAAGCACACGGGTGAAAAGCCCTTTCAGTGTTTGCTCTGCGAGAAAGCGTTTCGCAGTAAGATCGGTCTGGCGCAGCACACCGCCACTCACACCGGCGAATTCGACTACAATTGTTCCACCTGCGGCAAAGGTTTCCAGTGCAAGAGCTATCTGATAGTTCATCAGCGGGTCCATTCCGATCTAAAGCCTTATCCGTGCAGCACATGCGGCCAAAACTTCAAGACGAAACAGTCGCTGTTGGATCATCAAAATCGTCACATGGGAGTAAAGCCGTACATTTGCGAGATATGCGGACGGGGCTTCATAACGAAGGGTTTGTGCAAGAGCCACCAGAAGATCCACTCGGGCAAGGACAATCGCCAGTATCCCTGCGAGGTCTGCAACAAAATGTTCGTCAGCAAAAGCTACTTGAATACTCACTTGCGAATTCACACAGGCGAAAAGCCCTATCTTTGCGAGGTATGCGGCAAGGGATTTTTGACGCGCGTCGATCTCAAGATACACTCGACCATGCACACCGGCGAGAAGAGCTTCAAGTGCGAAATGTGCGGCAAAGTGTTCGCTCGGAGGGCCGCGCTTCGCTGTCATCGGAGATCGCACACCGGTGAACGACCATACAGATGCGACGTCTGCGGCAAAACTTTTACTCAATTCAGCCCGATGGCGATACACAAACGTCTTCACACCGGTGAACGTCCCTACGAGTGCGACGTATGCGGCAAAGCCTTCGTATCGAGATCGACCATGATGTGCCACAGGAAGAAACATCATTTGCCGATAACGCCAGCGTCCAAAGAATCGATCGTCGACAACTGCGAGCCGACGAATGTCAAAGCCATCGACGATAACGGGACGGTTATCCTCAGAGAGGCTCACGACGCAGTACACATAACGGCCGATTGA
Protein Sequence: MSDQLPKVVCGSCAYKLDQMFVFREKCLHTEGMFMEMLKMIKDEDGRSRRNRGEVRDIPVIQNGVERIHGNTENVRRCMDEMRNGECVSSEVANDASVHTMQVMDEMDLAGGEQVVSQEEIESQENDIEVAGIHCLDGDTVRMVDEHIREVSNHEIAMHLEGDITVVGDLTVDGHLDQLGINYVTAIATENPSQEQIVHYCDSVKYEAADVKEDYQRLQERLTVEVPSHPMKNDVGAKVFSSSQREAESELDERIISETDDRSTLERLHDESIPSTSHETSKESGIIVEYTKRTKEALLDNILNNPTLDETGSSWYVCPFCNEAADEPSSLAAHFEQHFCCCNCGLYFTSVEGLALHAEQCDFQKREEVDIEGEALHEEAAEEEEKDDPKFARNGAEVGSKPSTKNSSSVAEAADEEEVKRQSGTRQKWTPKVCAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHMGVKPYICEICGRGFITKGLCKSHQKIHSGKDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKAFVSRSTMMCHRKKHHLPITPASKESIVDNCEPTNVKAIDDNGTVILREAHDAVHITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00828969;
90% Identity: iTF_01101530; iTF_01102247; iTF_01102998;
80% Identity: -