Basic Information

Insect: Ophion costatus
Gene Symbol: -
Assembly: GCA_951751655.1
Location: OX632360.1:2740750-2743183[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.049 5.6 8.2 0.6 2 23 176 197 175 197 0.97

2 14 0.0015 0.17 12.9 2.9 2 23 210 231 210 231 0.98

3 14 0.004 0.46 11.6 1.0 2 19 238 255 237 257 0.94

4 14 0.00044 0.05 14.6 0.5 2 23 337 358 337 358 0.96

5 14 4.2e-06 0.00048 20.9 0.5 1 23 397 419 397 419 0.97

6 14 1e-06 0.00012 22.9 1.8 1 23 425 447 425 447 0.96

7 14 3.9e-05 0.0045 17.9 0.6 1 23 453 475 453 475 0.98

8 14 3.9e-05 0.0045 17.9 5.3 1 23 481 503 481 503 0.97

9 14 1e-07 1.2e-05 26.1 1.0 1 23 508 530 508 530 0.97

10 14 0.00011 0.013 16.5 1.0 1 23 536 558 536 558 0.97

11 14 9.9e-08 1.1e-05 26.1 3.8 1 23 564 586 564 586 0.96

12 14 2.2e-06 0.00026 21.8 1.4 1 23 592 614 592 614 0.98

13 14 7.7e-06 0.00088 20.1 1.2 1 23 632 654 632 654 0.93

14 14 0.0045 0.51 11.4 0.6 1 23 660 683 660 683 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.049	5.6	8.2	0.6	2	23	176	197	175	197	0.97
2	14	0.0015	0.17	12.9	2.9	2	23	210	231	210	231	0.98
3	14	0.004	0.46	11.6	1.0	2	19	238	255	237	257	0.94
4	14	0.00044	0.05	14.6	0.5	2	23	337	358	337	358	0.96
5	14	4.2e-06	0.00048	20.9	0.5	1	23	397	419	397	419	0.97
6	14	1e-06	0.00012	22.9	1.8	1	23	425	447	425	447	0.96
7	14	3.9e-05	0.0045	17.9	0.6	1	23	453	475	453	475	0.98
8	14	3.9e-05	0.0045	17.9	5.3	1	23	481	503	481	503	0.97
9	14	1e-07	1.2e-05	26.1	1.0	1	23	508	530	508	530	0.97
10	14	0.00011	0.013	16.5	1.0	1	23	536	558	536	558	0.97
11	14	9.9e-08	1.1e-05	26.1	3.8	1	23	564	586	564	586	0.96
12	14	2.2e-06	0.00026	21.8	1.4	1	23	592	614	592	614	0.98
13	14	7.7e-06	0.00088	20.1	1.2	1	23	632	654	632	654	0.93
14	14	0.0045	0.51	11.4	0.6	1	23	660	683	660	683	0.92

Sequence Information

Coding Sequence: ATGGATGCCGGATCTACGAGCGGTCAGGTTATGGACGAAAGCGTCGTCGGGGTCGCACTTAAGGAAGAATCAGACGGGAGATTCGCGCAGTCTTACATCGAGGACATCTGTCCGGCGACGTTCGGCAAGGTTTTCCTACCTATCGACAGTCATGAAGTGGATTTCACGGATGAAATGGTCAAGCTGGAGCTAGAGAGTCAGTCGGGCGAGCATCATATCTGGGCGGCGCAGTTAGCGACGACGACGCTCTGCGAGCAGGACGACTGCGGCATACACGGGAACCCCGGGGGCGTTGAGAGCGCCCCGGAGTCCTCCGGTCGGGATTCCGCGGTGGATCGCGAGGTgaaggaggacgaggaggaggaggcggaggaggaggagCAGGTCCGCgcggaggaagaggaagaggaggaggtgACATCGTCGTTGGATAACGAGGCTTCGCTCGACCGGGACTCGGACAAGGATCGTCGTAATGACGAGGACGCAAAACCGGACGATTCCACCTCCAAGTTCTACAAGATCCAGTGCACGATTTGCAAAAAGTGGTTTCTGAACAACGACTCGATGATAACGCATTTGAGAAATCACTGCGGGGGCGCCGGGCCGATGCCGAGCTCGGGCGAGCAGTGCCAGGTGTGCCAGCAGACGTTTCACGACGGCTCGAGTCTTCACGCGCACATGCTCAGCCACGTTGGAGCAAATCCAATCGAGTGTAACCTGTGCCAGAAGCGTTTCGCCTACAAGTGGTGCCTGAGAAATCACGCGACTCCCACGAGCACGAGCGCGACCGACCCGACGGGAAAAACCTTCGAGAATTGTTGTACCGCCGGTAGCAACGTGGTGGTGGTCGGTAGCGAGAACGTCGGTGTATTGCCCGGCGGTGTTTACGCCTACGAGAGCGTCGAACAGGCGAGAAAGTTATACGAGGAACGTACGAGCGGCAATCCCGAGGACGTGGCACGCCTGAAGGACGCCAAATCCGAGACTGAGCCCCGATCGGGCAATCGTTGCGAAATTTGCCGCACGCGCTTCAAGGATCGCGAGAGCCTCGATAGGCACGCGATCGTCCACGCCAACGAGACCGGCACGGCCTACAAGTACGATCTCTACTCCTCGACTTTGTTTCGCGACAAAGCCGATACGTCGCCGCGCGCCTCGAGCCACGCGACCAATCCGGCTAAACAATTCAAGTGCGCCCTCTGCGAAAGATCCTTCTCCCAGAGGACCGCTCTCAACAATCACATGCTCGCGCACAGCGGCGAAAAGCCACACGCCTGCAACATCTGCGAGAAAACGTACAAGCGAAAGTCCGAGCTCATAAGGCACACGATGGTGCACACGGGCGAACGACCATACGAGTGCAAAGAGTGCCTCATGACCTTTCGCGAAAAGGCCaaattgaattcgcacatgctcGTGCACACGGGCGAAAAGCCACACGAGTGTTACATATGTCACAAAGCTTGCGCGCGGAAATCCGATCTCAACAGTCACATGCTGTCGCACACCGGTGGCCAGTACGATTGCAAAGTTTGCGACAAAATATTCACCCGCAAATCCGATCTCAACAGGCACACACTGATACACACCGGTGAAAAGCCGTTCGCTTGCGAACACTGCGACATGGCGTTTCGGGAGAGAACGCGTCTCAATTCCCACATGCTCGTTCACACCGGGGACAAGAGACACGCGTGTCACATTTGCGGCAAGAGCTTTCGCGAAAAGTCCTCGCTGAAGAAACACATGCTCGTCCACACCGGCGATCGACCCTACGAGTGTTACATCTGTAAAAAGAGCTTCACCCAAAAGACAACGCTCAACAGTCACGTACTCGTGCACACCGGTGGACGAGCACAGGAAACTGCCACCGAGGCAGGAGGCGCAGGTTGCTACGAGTGCGACGCTTGTCCAAAATCGTTCAGGGACAAATCGTCGCTGAGAAAACACTCACTTTTTCACGCTAACGAACGTGTACACGAGTGCAACGTGTGCTTCAAACAGTTCCCGCACAAGGCCGCACTCGGCACACACGCCGCCATCGATCATCCCTCGTAG
Protein Sequence: MDAGSTSGQVMDESVVGVALKEESDGRFAQSYIEDICPATFGKVFLPIDSHEVDFTDEMVKLELESQSGEHHIWAAQLATTTLCEQDDCGIHGNPGGVESAPESSGRDSAVDREVKEDEEEEAEEEEQVRAEEEEEEEVTSSLDNEASLDRDSDKDRRNDEDAKPDDSTSKFYKIQCTICKKWFLNNDSMITHLRNHCGGAGPMPSSGEQCQVCQQTFHDGSSLHAHMLSHVGANPIECNLCQKRFAYKWCLRNHATPTSTSATDPTGKTFENCCTAGSNVVVVGSENVGVLPGGVYAYESVEQARKLYEERTSGNPEDVARLKDAKSETEPRSGNRCEICRTRFKDRESLDRHAIVHANETGTAYKYDLYSSTLFRDKADTSPRASSHATNPAKQFKCALCERSFSQRTALNNHMLAHSGEKPHACNICEKTYKRKSELIRHTMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHTLIHTGEKPFACEHCDMAFRERTRLNSHMLVHTGDKRHACHICGKSFREKSSLKKHMLVHTGDRPYECYICKKSFTQKTTLNSHVLVHTGGRAQETATEAGGAGCYECDACPKSFRDKSSLRKHSLFHANERVHECNVCFKQFPHKAALGTHAAIDHPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01101513;
90% Identity: iTF_01102239;
80% Identity: -