Ocos002439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ophion costatus
Gene Symbol
-
Assembly
GCA_951751655.1
Location
OX632356.1:9551430-9560758[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00041 0.047 14.7 0.8 1 20 93 112 93 114 0.95
2 25 0.035 4 8.6 3.7 1 23 151 174 151 174 0.93
3 25 0.00095 0.11 13.5 0.7 1 23 205 227 205 227 0.98
4 25 1.6e-05 0.0018 19.2 1.6 1 23 233 256 233 256 0.97
5 25 1e-06 0.00012 22.9 1.4 1 23 262 284 262 284 0.98
6 25 2.5e-07 2.9e-05 24.8 1.2 1 23 290 312 290 312 0.98
7 25 0.00098 0.11 13.5 2.7 1 23 318 340 318 340 0.98
8 25 6.5e-05 0.0075 17.2 1.1 1 23 346 368 346 368 0.96
9 25 9.2e-06 0.0011 19.9 1.4 2 23 375 396 374 396 0.97
10 25 0.13 15 6.8 0.3 1 23 407 429 407 429 0.96
11 25 6e-06 0.00069 20.5 2.7 1 23 435 457 435 457 0.97
12 25 0.00066 0.076 14.0 2.1 1 23 463 485 463 485 0.96
13 25 0.00038 0.043 14.8 5.5 1 23 491 513 491 513 0.98
14 25 2.3e-05 0.0027 18.6 1.5 1 21 519 539 519 540 0.95
15 25 0.04 4.6 8.4 3.3 3 23 577 598 576 598 0.97
16 25 8.7e-06 0.001 20.0 0.8 1 23 737 760 737 760 0.97
17 25 0.00011 0.013 16.5 0.6 2 23 767 788 766 788 0.97
18 25 0.0027 0.32 12.1 3.9 1 18 794 811 794 811 0.94
19 25 0.00099 0.11 13.5 0.4 1 23 904 926 904 926 0.98
20 25 0.00084 0.096 13.7 6.1 1 23 932 955 932 955 0.96
21 25 7.6e-05 0.0087 17.0 0.6 1 23 961 984 961 984 0.97
22 25 6.3e-05 0.0072 17.3 2.8 1 23 990 1012 990 1012 0.97
23 25 0.00076 0.087 13.8 1.0 1 23 1018 1040 1018 1040 0.96
24 25 1e-05 0.0012 19.7 3.7 1 23 1046 1068 1046 1068 0.98
25 25 5e-05 0.0057 17.6 2.1 1 23 1074 1097 1074 1097 0.98

Sequence Information

Coding Sequence
atgtaTCGCTCAATATCGGATCTTCGTGCTCATCAGAAGCGCGTTCAGGCCGGTTTGTGGATGCAAATGTGCGATTCGTGCGAGCGTCATTTCGCGTGGAAATTCGACGCAACGGCGGACGCGACATTCCGAAAATTCCTGAAAACCGAGGCAACGAGGATAACGCGGGCGCGAAGAGCTTTCGCGTCTCGAGAGCAACCCTCGAAGCTGCCGACGGTGAGGGAGGAAGCCGCGCCGCCGTTGGGGAGAAGCAAGAACGCGACAAGACAAAGCGCATTTACGTGCGACACGTGCGCGAGGTTATTCAAGAGAGAAAGCAATCTAAAGAGGCATCGCGCGTATTGCCGCGTAAAGGAAGTGCCGAAACCCGAGACAGAGAACGAGTATTGTCGCACAGGAGGCGAATCTGACTCGCCTCGCGATGACGAAAGTTCACGCGAATTGCGAAATTATCGTTGCGCTCGTTGCGATTACAGAACGAGGAGGAAGCGACTCTTGAAGCTCCACGTGAGCGAGTGTCACGAGCAAGCGGGAGCGAATAACGAGGGGAACAAATATGGCGACAAAGATATCATCGTAAGAGCGAGAATGGAGGCGAACGGTCGTGTGTACTATCACTGCGAGGACTGCGGGAAGAATCTTTTCTCCCCTTACACGTTCGCCTGGCACGTGAAAATTCACACGGGCGAGAGATCGTTCACCTGTCACCTGTGTGGCAAACAATTTCGCGTCAATCAGGGCCTGGCCCGCCATCTGCGCGAGACTCACGCCGGCATAAAAAAATTCTCCTGCGACGTTTGTTCCCGTTCATTTTCGACGAAACGCAACCTCGAGGATCATCGACGCATACACACCGGCGAACGTCCGTTCGTTTGTAACGTGTGCGGCAAAACTTTCAAGCAAAAGGCCTCGCTCTTTGTCCACAACCGCACGCACACGGACTCCTTTCCGTTCAAATGTAACTATTGTAATCAGGGCTGTCGCACGAGGCCGTCTCTAGTCGTGCATCTCACCAAACACACCGGCGAGAAGCCTCACATTTGCGACATATGCGAACGTGCTTTTCGCATCAAGTACGAGCTCAAGCGCCATCGGCTTGTACACTCGGACGAGAAACCGTGGCGGTGCTCCGATTGCGGCGCGTCCTTCAAACAGAAACGATATCTCGTTAATCACAGAAAACGCCACGTGAACGCAGTGCACCGTGGAGAAAAGAAATTCGCCTGCGATCTGTGCGATCGCCGTCTCGCAACGAAAATATCGCGGGACGAGCATCGCAGAGTTCACACGGACGAGAAGCCGCACGTTTGCGAGAGCTGCGGCAAAACATTCAAGCAAAAAGCTTCCCTCAACGTTCACAAACGATATCACGCACGCGAGGGCTGGCACGAGTGCAAAACGTGCGCTCGTTCTTTCGGACGAAGGCAAGATCTCAAAAAACACGAGCTCGTGCACTCTGGCGAAAAACCGTATGCCTGCGACACTTGTGACAAGCATTTTCGTACCGTTGGCTGCTTGAGCCGCCATCGGAAAACTCACGCAACGAACGAGTCCCACGTGTGCGACCATTGCGGCAGGGCCTTTGGACAAAAACGTTATCTCAGGCGTCACGTGAGAAATGTGAGAAAGGGAGAGTCGCAGGAACAATTGTGCGAAAGTATGGGCTCGACGTTGAACGTCATCAAGAGCGAGATACTGCTCTACGATAACGaggtgaaaaatgtattttgcaaTCAGTGCGATTGTTGCTTCGACCAAGTGCCCAGGCTCGTCGAGCACATGAGACGCGTGCACAACGATCAAGTTAATCAGTGTCGGTACTGCGAGTTCGTGTTTCGCGGTCCGATCGAGGGTTTTCGCGAGCACGTCGAGAGCCACGAGAACGAGGCGTTAAGCGAGAGAACGAAGGACGGAACCGAAAACATTGAAGATTCGACGAATCATTGTTGCGCGATTGAGGGCGCTGGATCGAAGAGTCAAGAGATCCGGGGATCGCGTGATGATACTTTGGGGATTGACGAAGAGGCGAAATGCGTCGAGGAATCGCTCGTCCAAACGGATTTCGATTGGATCGTTGCAAGCGAAGAAAGCACGCTGCTTAAGCACAACGATGAGGTTGAGCCGGCCAAAGAGGCAACGAGAATCGATATTGTCAATACGTCGTTTTCCGCTTCGCcggaaaaaatcgcaaaagttCCGAACAGCTCGTACATGTGCGAATTTTGCGGGAAAACGTACACTTCAATAGCGGATCTTCGTACTCATCAGAAGCGCGATCACGCCGGTTTGCGGTTGCAAATGTGCGATTTGTGCGAGCGTAATTTCGTGTCGAAGTCGGCACTCGAGTATCATCGACGCTCGCACACGAGACAACGGCCCTACAAGTGCGAGTACTGCGACAAAAAGTTTTGCACCCTTAGCTCCCTGTCAAGAAAAACTACGATAAAGCTCCGCGAGAATGTTAATGTTGGCGCCAGCGAGATTAGAGAAAACCGGAAGGCGTTAAACGGGAGAATAACCTTCGCGACGGCGGAGGAAAAGCCAAACGCATTTTCGAGGCCTTCCGAAAATCGTTACgagaagggaagaaaaaaaacgccccaaGATTCGAAGATACTCGTGATCCTCGAAACGCCAGGTGAAGATACATTGGGCAAGGAGGAAAGAGCAAGCGAAACGTCAACGAGAAAGAAGTTTCCCAACGATCCCTACGTCTGCGACCTGTGCGGCAAGCAATTTCTTCTTCGCGGCAGTCTGAAGTCTCACCTGAGACTACACACCGGTCTCAAATACTTCACGTGCCACATATGCGGCAAACAATTTGCTCAAAACGGCTGTCTTTATTATCATCTCAAGCACGTCCACGGGGGTGTGAAAAATCATTCGTGCGACATTTGCGGAAGATCTTTCGCGATGAAAGCCACAATGGAGGACCATCGTCGTTCCATTCACACCGGCGAACGACCTTACGTTTGCGATTGTTGCGGCAAAACGTTCACAACCAAGTCTTCGCTGTACATACACAGCAGAATTCACACGCAGAATTATCCTTAcgagtgtaaatattgcaaaaaGTCGTTCAGGTGGAATCAACAGTTGATCGGACACTTGACGATACACACGGGCGAAAGGAATCACAGCTGCGACGTATGCGGCAAAGCTTTTGGCGTGAAAAATCACCTCACGAGACACAAACGTACGCACAATACCGAAAAGCCCTACACGTGCGAAAAATGCGGTATGCGATTCGGGCAGAAGCGGTATCTCACCAGCCACGAAAGGTCCAAACACAGATAA
Protein Sequence
MYRSISDLRAHQKRVQAGLWMQMCDSCERHFAWKFDATADATFRKFLKTEATRITRARRAFASREQPSKLPTVREEAAPPLGRSKNATRQSAFTCDTCARLFKRESNLKRHRAYCRVKEVPKPETENEYCRTGGESDSPRDDESSRELRNYRCARCDYRTRRKRLLKLHVSECHEQAGANNEGNKYGDKDIIVRARMEANGRVYYHCEDCGKNLFSPYTFAWHVKIHTGERSFTCHLCGKQFRVNQGLARHLRETHAGIKKFSCDVCSRSFSTKRNLEDHRRIHTGERPFVCNVCGKTFKQKASLFVHNRTHTDSFPFKCNYCNQGCRTRPSLVVHLTKHTGEKPHICDICERAFRIKYELKRHRLVHSDEKPWRCSDCGASFKQKRYLVNHRKRHVNAVHRGEKKFACDLCDRRLATKISRDEHRRVHTDEKPHVCESCGKTFKQKASLNVHKRYHAREGWHECKTCARSFGRRQDLKKHELVHSGEKPYACDTCDKHFRTVGCLSRHRKTHATNESHVCDHCGRAFGQKRYLRRHVRNVRKGESQEQLCESMGSTLNVIKSEILLYDNEVKNVFCNQCDCCFDQVPRLVEHMRRVHNDQVNQCRYCEFVFRGPIEGFREHVESHENEALSERTKDGTENIEDSTNHCCAIEGAGSKSQEIRGSRDDTLGIDEEAKCVEESLVQTDFDWIVASEESTLLKHNDEVEPAKEATRIDIVNTSFSASPEKIAKVPNSSYMCEFCGKTYTSIADLRTHQKRDHAGLRLQMCDLCERNFVSKSALEYHRRSHTRQRPYKCEYCDKKFCTLSSLSRKTTIKLRENVNVGASEIRENRKALNGRITFATAEEKPNAFSRPSENRYEKGRKKTPQDSKILVILETPGEDTLGKEERASETSTRKKFPNDPYVCDLCGKQFLLRGSLKSHLRLHTGLKYFTCHICGKQFAQNGCLYYHLKHVHGGVKNHSCDICGRSFAMKATMEDHRRSIHTGERPYVCDCCGKTFTTKSSLYIHSRIHTQNYPYECKYCKKSFRWNQQLIGHLTIHTGERNHSCDVCGKAFGVKNHLTRHKRTHNTEKPYTCEKCGMRFGQKRYLTSHERSKHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-