Ocos003682.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- PRDM5
- Assembly
- GCA_951751655.1
- Location
- OX632356.1:39293534-39300538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 2.3e-05 0.0026 18.6 1.0 2 23 148 169 147 169 0.96 2 29 1.3e-07 1.5e-05 25.7 2.8 1 23 175 197 175 197 0.98 3 29 0.0011 0.13 13.3 0.7 1 23 202 225 202 225 0.98 4 29 0.00058 0.067 14.2 3.7 1 23 231 253 231 253 0.98 5 29 0.00011 0.012 16.5 0.2 1 23 259 282 259 282 0.97 6 29 0.00017 0.019 15.9 2.1 1 23 293 315 293 315 0.93 7 29 0.0086 0.98 10.5 5.7 1 23 319 341 319 341 0.91 8 29 3.5e-05 0.004 18.1 4.8 1 23 347 369 347 369 0.98 9 29 2.3e-05 0.0027 18.6 1.0 1 23 375 397 375 397 0.98 10 29 0.0087 1 10.5 0.4 2 23 516 538 515 538 0.95 11 29 0.04 4.6 8.4 0.2 1 21 545 565 545 568 0.95 12 29 0.01 1.2 10.3 4.7 1 23 602 624 602 624 0.98 13 29 0.063 7.2 7.8 0.2 1 23 653 674 653 674 0.87 14 29 0.0012 0.14 13.2 3.5 1 23 680 703 680 703 0.96 15 29 0.00024 0.028 15.4 2.9 1 23 838 861 838 861 0.95 16 29 0.00017 0.019 15.9 2.8 1 23 871 894 871 894 0.98 17 29 0.0015 0.17 12.9 3.5 1 23 929 951 929 951 0.97 18 29 0.00016 0.018 16.0 0.8 2 23 958 980 957 980 0.95 19 29 0.0013 0.15 13.1 0.8 1 23 987 1008 987 1008 0.93 20 29 0.0046 0.52 11.4 4.3 1 23 1014 1037 1014 1037 0.96 21 29 0.00028 0.032 15.2 1.2 2 23 1238 1259 1237 1259 0.96 22 29 2.2e-05 0.0026 18.7 0.8 1 23 1265 1287 1265 1287 0.97 23 29 0.61 70 4.7 2.8 1 23 1294 1317 1294 1317 0.92 24 29 8.9e-06 0.001 19.9 2.0 1 23 1323 1345 1323 1345 0.97 25 29 1.2 1.4e+02 3.7 4.4 2 20 1351 1369 1350 1373 0.82 26 29 9.4e-05 0.011 16.7 2.1 1 23 1380 1402 1380 1402 0.95 27 29 4.4e-07 5e-05 24.0 0.9 1 23 1406 1428 1406 1428 0.99 28 29 0.058 6.7 7.9 1.1 1 23 1434 1456 1434 1456 0.94 29 29 9e-06 0.001 19.9 0.6 1 23 1462 1484 1462 1484 0.99
Sequence Information
- Coding Sequence
- ATGTTCCCTCGTCGAACGATgtacATACCGCCCGATCCCCTAGGGCCAGATTTTCTCACGGTTAAGATAATGGACGATTTCTATCGAATCCCAAAGTCACTGTGCTACTTCATGATGAGACATCCGCCGCTCCAGGACTGCTCGCGTGACCAGGGAAAGAGGAAAACTGAGCCGGGCATCGAGGCGACGTCCCCGAGGAAGAGAAGAACGAGTAATCGCAGAGTGGCCGAGGAGGCGAGAGATGGCAGCTCGTCGCGGCAGCAGCTGACGGCCGTTTCAGGAATCAAAGTCGAGCACGTGGCCGAGGAGGAAAATGTGATCGATATCGAGGATATACCGCTCGACATTCGCAAAGCCGAGCTTTGTCGGGTAGACACGAAGGCTCCGACGACCGCGAAGAAGACGAGGCGGAAGAAAAAACGCACGAAGGACACGATACTCGAGTGCGAGACTTGCTCGTTGAGCTTTAGCCAGAAGGGACAGTACAGACGTCACATGATTAAGCATAGCACCGTAAGACTGCACAAGTGCGACGTTTGCGATAAAGCGTTCAAGCGAAAATCCGAGCTCAAGAATCACATGCAACTCCACAGTGGCGTCAAGTTCACCTGCGACGAGTGCAACTTCGTAACGACCAACAAGGTCTCGGTAAGGACACACGTGAGGCGCGTCCATCAACGTGACTTTCGTTACAAGTGCGACGAATGCGACAAGTCCTTCATGTCGAATTGCGAAATGAAGGATCATCGGACCAGTCATTTGGGCACCAAGAGCTTCATATGCGAGATATGCGGCAAGGCTTATCTGCAAAAGTCTTATCTGGTGGCGCACAAGCGAACGGTCCACGGCGTCGTCCAGAAGAGCCTCGTAAAGGAGCACCATTGCAACATTTGCAACAAGAGCTTCGCCTCCGAGTACACTCTTCAGAATCACGCGGGTGTACACTCGCGTAAATTTCTCTGCACCCACTGCGGCAAAGAATTCGCCACTAATCACGGGCTTCAGTTGCACTGCCGTCTCCACACCGGTGAACGACCCTTCCAGTGCAAACACTGCTCGAAAACATTCACGAGGCCGAACACCCTGAGACTCCACAATCTCACCCACACCGGAGAACGACCCTACGTGTGCGATCTCTGCGGCCAGAGCTTCACCCAACGCAGCAGCATGATGGGACACCGAAAGAAACACCCCGGCAGCCATCCGCCACCTCCGCCCACGCTGCTCAGCCGATCCGAGAACAAGAACGACCTCAGTGCGGTGAGGATCGTGAAGACCGAGTGTTCCACAGGGGAGGTAGACTCGCGCCTGAGCCTAACAACGAATGTGGCCAAGGTGGAACAATGTTCGGAAGACGGATACGAGATTGATATTTACGAGGACCCGTTGAAAATCTTGAAGAGCGAATGGGAGCCCATAGTCGAGTCGTCGAGCCATCCTCCACGAAGTTTCCGCAGTCTGATCGTGCGGTTGAACGAGGCTAGCGAATCGAATGACGTTAAGAAGAGGacgcaaaagaaaaacgtcTCACCGCCTGCGTACTTGGAGTGCTCCATCTGTCAGATGAAGTTCCGAGGCGCAAAGGGCTTGAAGGGTCATCGGATGCGCATGCACGCCGCCGAGCAGCCCAAATTCGAGTGCGATATTTGCGGCAATCGTTACCAGCTGAAGTCCGGTATCGCTAGACACATGCGTTGCAATCATCTGAGTCAACGTGGCTGTCGTTACTGCGGCAAACGAGTAATTGGCTTGCACCGCCACGAAAGGCGACATCGCGCCCAGTTGGACGACACCGCTGTCATTTACAACTGCACGATGTGCGGAAATAAATGTCGCAACGTGTGCAACCTCGCCAATCACATGCTCAAGCACAAGCGGAAATGTACCTGGGTTTGCGACCTATGCGGCCTCGTTGCCGCGAGTTCGCGAAAACTCGCGCGTCAACCGGTGAAAAAGTTTCCCTGCCCCGTCTGTCAAAAGCCGTTCGCGATGAGCAATTTTTATCAACACGTACTCCTGCACTCGAGCGTGAGGCCCTTCAAGTGTGAATTTTGCGATTCCACGTTCGTGCAACGCTCAACGTTTGTCAGACATCGCAAGCAGAGGCACCCGGGACCGCTGCCACCCATGAAAACCGTACCCATTGCCGATCTGGCGAAAGAATTCTTGCGGAGCATCTCCAAAACTATGGCGAAGCTTGTGAAAACCAAGTGTCCCATGGGGAAAATCATCCCGCACTCGAGCGTAGCAACGACAGAAGTGGCCGAGGTGAAGGTGGAACGTTGTTCGCAAGACGACTGTGACATTGACGTTTACGAGGAATCATCGGAAACCGTTAAAACCGAATGGCAGTTGAAAGTCGAGCCGCCGAGTAGTCCTCCAGGATGTTTCTCCAACACGGTCGACCGGAAGAACGAAACCAGCGATTGGAACGAAGATTCGTGTCTCGTGCAGCGCGAATCCGACGATCGGGAGCGGATGCGAAAGACGAACGTCTCGCAGTCCATGTGCCATGAGTGTTCCATCTGCCATACGAGGTTTACACGCGCGGGGACTTTGAGGGACCATCGGGCACGCTTGCACACGTCCGACCAGCCCCACCAGCCCGACTTCGAGTGCGACCATTGCGGCTATCGTTATAGGCTTAAGAAGGATATTGCCCGTCACATGCGGCGCAATCATATCGAACAGCGTCGTAGCTGTCGTTACTGCGGCAAACGAGTAATATACCTGGACAAACACGAACAGCGATGTCGCACCCACTTGGACAGCGCCACCTTTAATCACAGCTGTACGACGTGTGGAAGGAAATTTCTCCACGAGAGCCTCCTCGCCAATCACATGCTCACGCATAACCATAACGATTGCACCACTTGCGACATTTGCGGCCGCGTTACCAAGGATTCAAAAAAACTCGTGCGTCACAAGCGTCAGGCTCACCCACTCGTGAAAATAATGTTCCCCTGTCCCATCTGCAAGAAGTCGTACACGAGGAACAACTTTTACCAGCACGTACTCGTGCACTCGGGCCTGAGGCCCTTCGAGTGTGACCTTTGCGACTGCACGTTCGTTCAACGCTCGACGTTCATCTATCATCGCAAGCAGAAGCACCCGGGACCGCTGCCACGCATCAAACCCGTATCCATCGCCGATTTGGCGAACGAGTTTTTGCGAAACTTCTCCAAAGACCAgtACAATCCGCTAGATCCGCTAGGCTCGACGTTTCTGACGGTTAAGTTAGGCGAAGATTACTTCCGTATGCCAAAGTCACTGACGTTGTTCATGAAGAAGCAAACGCCACCGAGCCCCAAGCTGCAACGACGGCAGGCGACGCCGACCAACGTCGAGATGACGAACGCCAAGTTGGAGGTACACGACGAAGAATTGAAAGTCCCGAAGCACGAGGCGAGGAAAACGAGCGAGGCGAAGGAAACGAACGAGGCGACGATGACGAACAAGAGCGAGGCAGGTACGTTCGAAGTTGCGAAGAGCAAGCCGAACAAGTCGACCAAGGCGCAGGCGCGAAGTAGAAACGCCAGAGCGAAGAAGAGACACGAGTGTGAGACTGTTGTGAGTAAGAACGAGACGAACGATGGGACGAGCGAGCAGGAGGACGAGGCCGATTATTACGACGAGTTCGACGATTTGGACGACATACCGCTGGATTACAGGCAGAAAAAAGCGAGATTCGGCAATTCGAAGAAACTGCTCACCTGCGAAATATGCTATTTGATATTCGATCGCAAGAGCAAACTCACCAGTCACATGTTCAAGCACAGTAACTCGAGGCCCCACGTGTGCACCGTATGCTCGAAGGCCTTCAAGACCGGCGCCTATCTCACTCGACACATGGAGATACACGCGGACACCGTGCAGGAGCACGCCTGCGGCCTGTGCGACTTCAAGGCTCGCACCAAGCCCTATCTCAAGATACATCACATCAGAAAGCACACGGACGACTACAATTTCAATTGTCGCGAGTGCGGCAAACGCTTCAAGGTACAATCGGACTACACCACCCACATGAAAGATCACGACATGGAGTCTTGCGTTTGTGACATTTGCGGCTCTTCCTACACCAGTCGCAGCTCGCTCTACTTTCACAAGCATTACAAGCACAAGCCCAAGATCAAGGAGTTCGAGTGTCTCACCTGCAAGAAACGCTTCAAGAGCCAAAAGAATCTCAACACCCACGCGGAACTGCACAAAATGAAATACGTTTGCGAGCAGTGCGGCATGGAGTTCAAGTCGAAATACGGCCTGACTAAACATCTGCGCACGCATTCCGGCGAGAAGTCTTACTTGTGCGCCATCTGCGGCAAAACCTTCGGTTGCCTGAGCTCGCAAAAAATTCATCTGCTGACGCACGTAGGCGAACGTCCGTACGTCTGCGACATTTGCGGCCAGAGCTTCACTCAGAGATCACCCATGATGCTACATCGGAGAAAACATCCGGGCGTCAATCCACCACCGCCACCCATCAAAATAACCAATCTCTTGCACGGCGTTCAAGACAAGATAATCGTTAACAAACACGCGCGCAAGGACGACGCGAAGCAGGACGTCTGA
- Protein Sequence
- MFPRRTMYIPPDPLGPDFLTVKIMDDFYRIPKSLCYFMMRHPPLQDCSRDQGKRKTEPGIEATSPRKRRTSNRRVAEEARDGSSSRQQLTAVSGIKVEHVAEEENVIDIEDIPLDIRKAELCRVDTKAPTTAKKTRRKKKRTKDTILECETCSLSFSQKGQYRRHMIKHSTVRLHKCDVCDKAFKRKSELKNHMQLHSGVKFTCDECNFVTTNKVSVRTHVRRVHQRDFRYKCDECDKSFMSNCEMKDHRTSHLGTKSFICEICGKAYLQKSYLVAHKRTVHGVVQKSLVKEHHCNICNKSFASEYTLQNHAGVHSRKFLCTHCGKEFATNHGLQLHCRLHTGERPFQCKHCSKTFTRPNTLRLHNLTHTGERPYVCDLCGQSFTQRSSMMGHRKKHPGSHPPPPPTLLSRSENKNDLSAVRIVKTECSTGEVDSRLSLTTNVAKVEQCSEDGYEIDIYEDPLKILKSEWEPIVESSSHPPRSFRSLIVRLNEASESNDVKKRTQKKNVSPPAYLECSICQMKFRGAKGLKGHRMRMHAAEQPKFECDICGNRYQLKSGIARHMRCNHLSQRGCRYCGKRVIGLHRHERRHRAQLDDTAVIYNCTMCGNKCRNVCNLANHMLKHKRKCTWVCDLCGLVAASSRKLARQPVKKFPCPVCQKPFAMSNFYQHVLLHSSVRPFKCEFCDSTFVQRSTFVRHRKQRHPGPLPPMKTVPIADLAKEFLRSISKTMAKLVKTKCPMGKIIPHSSVATTEVAEVKVERCSQDDCDIDVYEESSETVKTEWQLKVEPPSSPPGCFSNTVDRKNETSDWNEDSCLVQRESDDRERMRKTNVSQSMCHECSICHTRFTRAGTLRDHRARLHTSDQPHQPDFECDHCGYRYRLKKDIARHMRRNHIEQRRSCRYCGKRVIYLDKHEQRCRTHLDSATFNHSCTTCGRKFLHESLLANHMLTHNHNDCTTCDICGRVTKDSKKLVRHKRQAHPLVKIMFPCPICKKSYTRNNFYQHVLVHSGLRPFECDLCDCTFVQRSTFIYHRKQKHPGPLPRIKPVSIADLANEFLRNFSKDQYNPLDPLGSTFLTVKLGEDYFRMPKSLTLFMKKQTPPSPKLQRRQATPTNVEMTNAKLEVHDEELKVPKHEARKTSEAKETNEATMTNKSEAGTFEVAKSKPNKSTKAQARSRNARAKKRHECETVVSKNETNDGTSEQEDEADYYDEFDDLDDIPLDYRQKKARFGNSKKLLTCEICYLIFDRKSKLTSHMFKHSNSRPHVCTVCSKAFKTGAYLTRHMEIHADTVQEHACGLCDFKARTKPYLKIHHIRKHTDDYNFNCRECGKRFKVQSDYTTHMKDHDMESCVCDICGSSYTSRSSLYFHKHYKHKPKIKEFECLTCKKRFKSQKNLNTHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVNPPPPPIKITNLLHGVQDKIIVNKHARKDDAKQDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -