Obrm009267.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01003037.1:49054-52579[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.15 12.5 1.0 1 23 93 116 93 116 0.96 2 11 2.9e-05 0.0018 18.5 5.9 1 23 122 145 122 145 0.98 3 11 0.0052 0.33 11.4 0.1 3 23 153 173 151 173 0.96 4 11 0.00052 0.033 14.6 3.0 1 23 179 201 179 201 0.97 5 11 5.7 3.6e+02 1.9 3.0 1 22 219 243 219 245 0.62 6 11 1.8e-05 0.0011 19.2 1.2 1 23 261 283 261 283 0.98 7 11 6.9e-06 0.00044 20.5 1.2 1 23 289 311 289 311 0.98 8 11 3.1e-06 0.0002 21.6 0.7 3 23 322 342 321 342 0.96 9 11 1.3e-06 8e-05 22.8 0.7 3 23 350 370 348 370 0.97 10 11 0.00064 0.041 14.3 4.1 1 23 376 398 376 398 0.98 11 11 7.4 4.7e+02 1.5 0.2 1 12 404 415 404 416 0.88
Sequence Information
- Coding Sequence
- TTTGCAAGTGACTCCATTAAGACTCTGAGCAGGGAGACTATACTGGACTTAAGGATGGTCTCTCTGGTACCTGTTTCGAACCCAGACGACTCTGTTGAAATGGCTGATGAAACTTTAAAGTCAGACGTTGTGAAAACTGAATTGACCCTCAAGTTGGAATACTGCTCGGTTGATGAACATGTGATTGATGATGGAACATCACCGGACCAACATCCAACTGTAGTTGTAAAGAAAGAgaAACTCTGCAGACAACGAAAAGAAACCATAAACTACCCTCACGCTTGCGACGTGTGCAGCAAAACGTTCTTACTTAAAACTCTTTTAAAATCGCATATAATGACAGCTCATGCTTTAGAAATGCGATATCCCTGCAAAACATGCCATAAAAAATTTACCAACAGTTTGAAGCTAAACaagcatattaaaaaaaaacaccctgaaGAACACCCGTTAGCTTGCAACGCATGCGACAGAATACTAACTAAGATATCTAATTGGAGACGGCACATCGACACTCATATTGGTGTTAGACCTTTCACCTGCGACTGTTGCCTCAAAACATTCCCCGAAAAGGGTACACTCAAAAGACATATGAAAATACATAACAGCGTGACTCTGGGCAATAACGATAAGCCTATCGAAACAGGATTTCACTTCGTCTGCGTCACTTGCGGCCAAGGATTTGAACTATTATCTTCTAAAAGGCACTTACAAGGTCACGTCCTAAGAGTACACACTGATAAATCTGATAATATAACGTCTACAAATCCGAGACCTGAATATAGCTGTAAATTGTGCGGGAAATCGTATCTTCAAAAGAAATCTTTAACTATCCACATCAGACTCCACACAGGGGAAAAGCCATACAGCTGCACTTTGTGCAGGCAATTGTTTGCTAGGCAGAGTTCTCTAAGACGGCATGTAAGAATTCACTCGGGAGAAACATTTAAAAGATCGAACCCTTGCGAAGTTTGCGGCAAAACGTTCTCTCAGCCATGTTCTTTATTGAAACACAGGGCTGTTCATTCAGAACAAAGACCTTTCGGTTGCGATACTTGCGGTAAAGCGTTTTCTAGAAAGGATACCCTCACTTATCACATTAAGCTTCACACGGGTATAAAGCCATATAATTGCAAAATGTGTGGAATGTCGTTTGCTTGCACGAGAAGTTTGAGCAAACACATGAAGACACATAGTGAAGTAAAGCCCTATGTGTGCGTGGTTTGCTATAAGCTGTTTGCTCAACGC
- Protein Sequence
- FASDSIKTLSRETILDLRMVSLVPVSNPDDSVEMADETLKSDVVKTELTLKLEYCSVDEHVIDDGTSPDQHPTVVVKKEKLCRQRKETINYPHACDVCSKTFLLKTLLKSHIMTAHALEMRYPCKTCHKKFTNSLKLNKHIKKKHPEEHPLACNACDRILTKISNWRRHIDTHIGVRPFTCDCCLKTFPEKGTLKRHMKIHNSVTLGNNDKPIETGFHFVCVTCGQGFELLSSKRHLQGHVLRVHTDKSDNITSTNPRPEYSCKLCGKSYLQKKSLTIHIRLHTGEKPYSCTLCRQLFARQSSLRRHVRIHSGETFKRSNPCEVCGKTFSQPCSLLKHRAVHSEQRPFGCDTCGKAFSRKDTLTYHIKLHTGIKPYNCKMCGMSFACTRSLSKHMKTHSEVKPYVCVVCYKLFAQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -