Obrm003190.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01000643.1:51331-95224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5e-05 0.00097 19.4 1.5 1 23 64 86 64 86 0.98 2 10 0.23 14 6.3 2.9 1 23 92 115 92 115 0.90 3 10 3.3e-05 0.0021 18.3 0.2 1 23 121 143 121 143 0.98 4 10 1.7e-06 0.00011 22.4 1.7 1 23 148 170 148 170 0.99 5 10 4.2e-06 0.00027 21.2 3.5 1 23 176 198 176 198 0.99 6 10 6.1e-07 3.8e-05 23.8 1.0 1 23 204 227 204 227 0.95 7 10 1.3e-05 0.00085 19.6 2.9 1 23 233 255 233 255 0.97 8 10 1.2e-05 0.00076 19.7 0.9 1 23 261 283 261 283 0.98 9 10 2.5 1.6e+02 3.0 0.1 1 12 289 300 289 303 0.88 10 10 0.093 5.9 7.5 0.2 10 23 305 318 304 318 0.94
Sequence Information
- Coding Sequence
- ctGAAAACAGAAACCTTGAAAAAAGATCTACAGGAAACCGATGACAAATACGATGGATCAAAGCCCCTGGACATATTCGTAGACCCCTCACTGGACTCCTCGGACCCCTCGCTAGACATTGATGATCAGCCACTCTGCACATTAAAGGatgAAGACTCAAACTCAAAAATGAAGACGAAAACCAAGAAATTCTCGTGCAGCTTTTGCGAAAAACAATTCTCATACAACGGCTCTCTCGAAATGCACATGAAGCTACACACCGGAGAAAAATCATACATATGCCTTCTATGCACTGATACCTTCCATACAAACAAGGACTTGACCAAACATTTTGGCTCCAAGCACAGCGATGGAGCTAATTACCCCTGCACTATATGCTCGAAGGTCTTGGACAAGCCGAAGCTACTTAAAAAGCACTTAAATATACACTTCGATAAGAAGTTTAAGTGCTCAGAGTGTGAAAAAgagtttcaaagaaaaaagggcTTGAAAGAACACATGAAAGTTCACACAGGTGAAAGAAAATATCAGTGTGAAGTCTGTCAAAAGTCATTTGGTCATAACCAAACGTTGAAATCTCATATGTATACTCATACAGGCGAAAAGCCATATATTTGCGATGTGTGTGGGCGAAGGTTTCCGCAAAGAACTCATTTAAAAagacatatttatattattcacaaCAACATAAAAGCACATTCCtgtaatgtatgtaaaaaaaacttttcctcCAAAAGTTACTTAGCTATCCATGAACGACAACATACGGGTGAAAAACCATTTTCTTGTGAAGTGTGTAAAAAGGATTTTACCGCATATACAACATTAAAAGTCCATATGAGAGTGCATACTGGGTTTAAGCCATATGCGTGCAGTTTTTGCGAGAGACAGTTCGCCCAAATGGCTTCGCAGTTTTCTGTGAATGGTAACCTTAAAATGCATATGAGATTACATACGGGTGTGAAGTCATTTTCTTGTGAGGTGTGCTGTACCCAGTTTAGCCAAAGTTCAGGATTCTTAGGGCCTCTTCCACCACCACACATGCTGTTTGAGAGCGCTGATGCGCTAGTAGTGAGAGGGACCCCGACTTTCGAccttaagatagatagattaactctcgagtgtatgtatGATAGTGGAAAATTGCGACAACATTTTTCCCTGAGGATTTTATCAAAAAACGGCGACGAAATGCAagGTCCGGCGCAAGCGCAAGTTCACCCAGCCAGCTTGCCAGCCTGTCAGTCGAAGACCGACCGTCGCGAGGGCAACACGTCCCGTCACATGTCAAAAACAAAtggatttaaatat
- Protein Sequence
- LKTETLKKDLQETDDKYDGSKPLDIFVDPSLDSSDPSLDIDDQPLCTLKDEDSNSKMKTKTKKFSCSFCEKQFSYNGSLEMHMKLHTGEKSYICLLCTDTFHTNKDLTKHFGSKHSDGANYPCTICSKVLDKPKLLKKHLNIHFDKKFKCSECEKEFQRKKGLKEHMKVHTGERKYQCEVCQKSFGHNQTLKSHMYTHTGEKPYICDVCGRRFPQRTHLKRHIYIIHNNIKAHSCNVCKKNFSSKSYLAIHERQHTGEKPFSCEVCKKDFTAYTTLKVHMRVHTGFKPYACSFCERQFAQMASQFSVNGNLKMHMRLHTGVKSFSCEVCCTQFSQSSGFLGPLPPPHMLFESADALVVRGTPTFDLKIDRLTLECMYDSGKLRQHFSLRILSKNGDEMQGPAQAQVHPASLPACQSKTDRREGNTSRHMSKTNGFKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -