Obrm014901.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01008298.1:7619-20570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 11 6.7 3.6 1 23 3 26 3 26 0.97 2 18 0.0002 0.013 15.9 4.5 1 23 32 55 32 55 0.94 3 18 0.00013 0.0085 16.4 0.6 2 23 62 84 61 84 0.94 4 18 0.096 6.1 7.4 2.9 2 23 91 112 90 112 0.95 5 18 2.7e-06 0.00017 21.8 5.6 1 23 118 140 118 140 0.98 6 18 3.1e-05 0.002 18.4 0.1 2 23 147 169 146 169 0.95 7 18 0.27 17 6.0 0.9 1 23 174 197 174 197 0.95 8 18 0.00072 0.046 14.1 3.7 1 23 203 226 203 226 0.94 9 18 8.3e-05 0.0053 17.1 3.0 1 23 232 255 232 255 0.96 10 18 0.049 3.1 8.4 0.6 2 23 262 283 261 283 0.95 11 18 1.2e-05 0.00075 19.7 5.8 1 23 289 311 289 311 0.98 12 18 3.1e-05 0.002 18.4 0.1 2 23 318 340 317 340 0.95 13 18 0.27 17 6.0 0.9 1 23 347 370 347 370 0.95 14 18 0.00072 0.046 14.1 3.7 1 23 376 399 376 399 0.94 15 18 0.0046 0.29 11.6 0.9 2 23 406 428 405 428 0.93 16 18 0.0058 0.37 11.3 1.8 2 23 435 456 434 456 0.96 17 18 1.2e-05 0.00075 19.7 5.8 1 23 462 484 462 484 0.98 18 18 3.1e-05 0.002 18.4 0.1 2 23 491 513 490 513 0.95
Sequence Information
- Coding Sequence
- GACTCCTTCAAGTGCAGTCGCTGTGGCGAGCTGTGCAAGACTCGTAGAAAAGCTTTAGAGCACTACAGGAGAGTTCATTTGAAACTTCTAAAATACAAATGCACGCATTGTACAAAGAGTTTCGAAACTTGTGCTCTGCTGAAGATTCACAAACTCGAAGAACATAACATCGACGAGAGATTGAAATGCAACGCATGCGACAAGATTTTCTATAAGAAAGAGTTACTTAAATTGCACATGAACGCATACCATATGATGGGCGAGAGAGTAAAGTGCCCCATGTGCGATTATGAGACTTGCAACAAGATGACGATGTATAAGCATAAAGTGAAGCATACAACAACGAAGAACTTCCACTGCACGTATTGTAAGAAGTCGTATAAGAGGAAGAGTAATTTGCAACTCCACGAGAGGATCCACACGGGAGACAAGCGCAAGGTGTGCGCGGAGTGCGGACAGGCCTTCGTGCAGAAAGCCAGCCTCAACTACCACATGGCGAAGTACCATCCTAGAGACGCCTTCAAGTGCACTCTCTGCGACGAGCTGAGCAAGACTCCCAAACAATCTTTAGAGCACTACAGAAGAGTTCATTTGAAACTTCTAAAGTTCAAATGCACGCATTGTGCAAAGAGTTTCGAAACTTGTGCTCTGCTGAAGATTCACAAACTCGAAGAACATAACATCGACGAGAGATTCAAATGCAACGCATGCGACAAGATATTCTATCATAAAAGGTTACTTAAATTGCACATGAACGCATACCATAGGATGGGCGAGAGAGTAAAGTGCCCCATGTGCGATTATGAGACTTTCAGCAAGATGATGCTGGATAAGCATAAAGTTAGGCATACAACATCGAAGAACTTCCACTGCACGTATTGTAAGAAGTCGTATAAGAGGAAGACTAATTTGCAACTCCACGAGAGGATCCACACGGGAGACAAGCGCAAGGTGTGTGCGGAGTGCGGACAGGCCTTCGTGCAGAAAGCCAGCCTCAACTACCACATGGCGAAGTACCATCCTAGTGCAGGAGACGCCTTCAAGTGCACTCTCTGCGACGAGCTGAGCAAGACTCCCAAACAATCTTTAGAGCACTACAGAAGAGTTCATTTGAAACTTCTAAAGTTCAAATGCACGCATTGTGCAAAGAGTTTCGAAACTTGTGCTCTGTTGAAGATTCACAAACTCGAGGAACATAACATCGACGAGAGATTGAAATGCAACGCATGCGACAAGATATTCTATCAGAAAAGGTTACTTCAATTTCACATGAACGCATACCATATGATGGGCGAGAGAGTTAAGTGCCCCATGTGCGATTATGAGACTTGCAACAAGGTGTTGCTGTATAAGCATAAAGTGAGGCATACAACATCGAAGAACTTCCACTGCACGTATTGTAAGAAGTCGTATAAGAGGAAGACTAATTTGCAACTCCACGAGAGGATCCACACGGGGGACAAGCGCAAGGTGTGCGCGGAGTGCGGACAGGCCTTCGTGCAGAAAGCCAGCCTCAACTACCACATGGCGAAGTACCATCCTAGTGTTAACttt
- Protein Sequence
- DSFKCSRCGELCKTRRKALEHYRRVHLKLLKYKCTHCTKSFETCALLKIHKLEEHNIDERLKCNACDKIFYKKELLKLHMNAYHMMGERVKCPMCDYETCNKMTMYKHKVKHTTTKNFHCTYCKKSYKRKSNLQLHERIHTGDKRKVCAECGQAFVQKASLNYHMAKYHPRDAFKCTLCDELSKTPKQSLEHYRRVHLKLLKFKCTHCAKSFETCALLKIHKLEEHNIDERFKCNACDKIFYHKRLLKLHMNAYHRMGERVKCPMCDYETFSKMMLDKHKVRHTTSKNFHCTYCKKSYKRKTNLQLHERIHTGDKRKVCAECGQAFVQKASLNYHMAKYHPSAGDAFKCTLCDELSKTPKQSLEHYRRVHLKLLKFKCTHCAKSFETCALLKIHKLEEHNIDERLKCNACDKIFYQKRLLQFHMNAYHMMGERVKCPMCDYETCNKVLLYKHKVRHTTSKNFHCTYCKKSYKRKTNLQLHERIHTGDKRKVCAECGQAFVQKASLNYHMAKYHPSVNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -