Obrm010952.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01004105.1:29923-32814[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.34 21 5.7 1.7 2 23 4 25 3 25 0.93 2 19 0.14 8.6 7.0 0.3 3 23 77 97 75 97 0.96 3 19 1.2e-06 7.8e-05 22.8 1.6 2 23 184 205 184 205 0.97 4 19 3.4e-05 0.0021 18.3 0.1 5 23 217 236 215 236 0.96 5 19 0.0036 0.23 11.9 1.0 1 23 242 264 242 264 0.95 6 19 0.0047 0.3 11.6 1.4 1 23 270 292 270 292 0.98 7 19 0.00052 0.033 14.6 0.4 1 17 297 313 297 314 0.92 8 19 0.048 3.1 8.4 0.7 1 23 447 469 447 469 0.96 9 19 0.00011 0.0071 16.7 0.2 2 23 476 498 475 498 0.93 10 19 2.3e-05 0.0015 18.8 1.2 3 23 506 526 505 526 0.98 11 19 7.3e-08 4.6e-06 26.7 1.8 1 23 532 554 532 554 0.99 12 19 0.00023 0.014 15.7 0.1 1 23 560 582 560 582 0.97 13 19 0.97 61 4.3 0.0 6 20 592 606 591 609 0.94 14 19 0.0012 0.078 13.4 0.2 1 23 615 638 615 638 0.97 15 19 0.008 0.51 10.8 0.4 1 23 683 706 683 706 0.90 16 19 1.2e-05 0.00074 19.8 2.1 1 23 712 734 712 734 0.96 17 19 0.0012 0.077 13.4 0.2 3 23 742 762 741 762 0.98 18 19 0.017 1.1 9.8 0.4 6 23 771 788 770 788 0.96 19 19 0.012 0.77 10.3 1.3 5 23 797 815 794 815 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGTCACAAATGCGACTTGAAAACTTCAAGCGACACCTTCGTCAAGCATTTGGAATCAAATCACGGAGACGTCAGAGACCACGATACTGTAGAGGCATTTGTGAGAGACTACGTGACCTTCGAAGAGACGCTCATATCCGAATCTGATGGAGATGACGCGTCAATAGTGTCTGTGGCATCAACTGAAGCGCCTGACGTCATACCACAACGCTTGGACTGTCCCCTCTGTGCTAGCGCGTTTTCTTCTCGTTTTCGACTTGTCCAGCACCTAACTAAGCATCCAGAAGCAAACCTTGGCGATGGCATATCGTGTTGTGGCGACACTCGAAACGAGAATGAGCTTATAACACATTTGAACAGGGAGCATAAAGATCCAAATCGTATACAATGTAAAAGCTGTGATCACATCGCTGTCGATAAGCCCACGTCGACTACGCACATCGCCCACTGCCATACGGAGTCAAAATCAGATGTCATTACGAATATACAACTTGGTTCTCCCGGACCTGATGAGACCAATCAGAAACGAATACCAGCCGTCTGTCCCAATTGCAACCGCACTTTTTCTAACAAATACAATATGCTTAATCATATGAAAAGCCACGCTAAAGACGCTAAAACTTCCAAATTTGTTTGTGAATGTGGAAAAAGTTATTCCACTCGCGGGAATTTGGTAGCACACATACGCATAGCGCACACTGAGGAGTTACCCCATAGGTGTAGTGACTGTGGCGAGGGGTTCCCCACTCGTTCTACTCGTGATATCCATTCTCGCTTACACTCTGGTGCACGCCCCTTCTCTTGCGCATTTTGTCCGCTGTCCTTCCGTTCTAAGAACTCGCAAGATAAACATCAAGAGACGCACGTCCCGCCTCAGCACGAGTGCGAGCTTTGCGGTAAGAAGTTCCGAAGAAAGGCACATCTGAGCAGCGTACAACCGCGTTGCGCGAAAATCAAGTTGGGACGCACGTATGAAGACGAACCACTGTTGTATAGGTCCGCGGAGCCGCCGGCGTTCGAGGGAGAAGACTTGCTCGACAACGATTCAAATGATGACTCGGATTCGGCCCCACTAGCTGAACTAGTTTCCACCGACCCATTGGCTGCCCTACGACGAGCCTTGCGAGACCTCCGAGACCACTACAGCGAGCGTCATTTGCGCTCGCGGCCCGAGACCAGCTCTGAAGAAAGTGGACCGGATGAGGATGATCTCAATCCGGATAGCTTCGACGACCTCACACGCCTTAATATGCGCCGTGACCGCTTCGACGATGCCACGCGGCAGGCACTCGACGCCGCGCGCGTGCGTGCCGATGGACGGACGTACTACGTGTGCATTATCTGTGGGCGTCGCCTCGCCTCACCGCATGCCTTTGTCCACCATAACAGGATTCATACAGGCGAGCGACCTCAAGTGTGTCATGTGTGCGGGAAGAGGTTCCGTGCTCCGCAGGGGTTAGCCCGACACATAGCAGAGACCCACGAGCGCCGTCGCCGGCGTGCCTGTCGTCTCTGCCAGCGCACCTTTGCCAACGAGCAGAACCTTCGACAACATCTCAGAACTCACACAGGCGAACGTCCGTATCAATGTAACGAATGCGGTAAGCGGTTTGCCCAAAGCGGATCGCTACACGCACATCGTCGAACCCATACGTTGCGTCGTGCATTTACCTGTGCTGATTGCGGTGCTGCCTTCCGCCTGCGCGCCGGGTTAACCCGCCACGCGTTACGTCACTCGGGAGAACGTCCACACCGCTGCGCCTGCGGTCGCGCCTTCGCCGCCAAACACGAACTCGTGGCGCATTTACCGCTGCACGGAGATCAGACTCCCCACGTGTGTGGGATATGTGGTGCTGCGTACAAGCTACGCCGTGCGCTACGGGACCATACCCGAAGCGCGCATCCGCCTCCTGCATCATCTTCAACGCGTTTGGAAACCGCCGAGTCAGACCCACCACTGGACGTCGAGATTCCGCAGGCTCAACGCGACGGTACAGCGAGCGGTCCGCAAAGGAAGAAGCGGATGGTGAAACGGCACAGCTGCGTTACGTGTGGACGCATATTATCAGACGCCTGTAACCTAGCGCGCCACGTCGATGCAGTTCACGTTATGCGCCGTCCGCACGCCTGCGCTGTGTGCAGGCGTGCCTTCACCCGCGCGGAACACCTTCAGTCGCACATGCGGTTACATACTACTCCAGCTTCTCTCTTGTGTGATAAGTGCGGCGCTGCCTGTGCGTCAGCAGCTGCATTACGCTCTCACCGACGGATACATACTGCCCCGCGGTATGAGTGTGCTTGCGGCGCGCGCTTTCGGCGCAGTTCAGAACTCCACGCGCATTCTTCTGTACACTCCGGGGACCGTCCGCATGTTTGCTGGTGCGGACGCGCTTTTCGTCTGCGCGCGCAGTTGACTATGCACGCGCGAAGACATGGTGCGACCACGGTGGACAGTGAGCACGGGGTCACGCAACTTGCGAGTCGCTGTGTACCAATAGGAGACATTTCGGAAAGTTATCACCCAGCACCAACACCA
- Protein Sequence
- MELVCHKCDLKTSSDTFVKHLESNHGDVRDHDTVEAFVRDYVTFEETLISESDGDDASIVSVASTEAPDVIPQRLDCPLCASAFSSRFRLVQHLTKHPEANLGDGISCCGDTRNENELITHLNREHKDPNRIQCKSCDHIAVDKPTSTTHIAHCHTESKSDVITNIQLGSPGPDETNQKRIPAVCPNCNRTFSNKYNMLNHMKSHAKDAKTSKFVCECGKSYSTRGNLVAHIRIAHTEELPHRCSDCGEGFPTRSTRDIHSRLHSGARPFSCAFCPLSFRSKNSQDKHQETHVPPQHECELCGKKFRRKAHLSSVQPRCAKIKLGRTYEDEPLLYRSAEPPAFEGEDLLDNDSNDDSDSAPLAELVSTDPLAALRRALRDLRDHYSERHLRSRPETSSEESGPDEDDLNPDSFDDLTRLNMRRDRFDDATRQALDAARVRADGRTYYVCIICGRRLASPHAFVHHNRIHTGERPQVCHVCGKRFRAPQGLARHIAETHERRRRRACRLCQRTFANEQNLRQHLRTHTGERPYQCNECGKRFAQSGSLHAHRRTHTLRRAFTCADCGAAFRLRAGLTRHALRHSGERPHRCACGRAFAAKHELVAHLPLHGDQTPHVCGICGAAYKLRRALRDHTRSAHPPPASSSTRLETAESDPPLDVEIPQAQRDGTASGPQRKKRMVKRHSCVTCGRILSDACNLARHVDAVHVMRRPHACAVCRRAFTRAEHLQSHMRLHTTPASLLCDKCGAACASAAALRSHRRIHTAPRYECACGARFRRSSELHAHSSVHSGDRPHVCWCGRAFRLRAQLTMHARRHGATTVDSEHGVTQLASRCVPIGDISESYHPAPTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -