Obrm005850.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Operophtera brumata
Gene Symbol
-
Assembly
GCA_001266575.1
Location
JTDY01001509.1:42791-49302[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00027 0.017 15.5 1.5 1 23 14 36 14 36 0.97
2 22 8.1e-06 0.00052 20.3 1.1 1 23 65 87 65 87 0.98
3 22 0.047 3 8.4 1.2 5 23 95 114 92 114 0.93
4 22 0.00015 0.0098 16.2 1.2 1 23 178 200 178 200 0.98
5 22 0.0035 0.22 12.0 1.1 3 23 208 228 206 228 0.96
6 22 0.00038 0.024 15.0 1.8 2 23 237 258 236 258 0.97
7 22 0.11 6.9 7.3 2.8 1 23 285 307 285 307 0.98
8 22 0.058 3.7 8.1 0.3 1 23 313 335 313 335 0.97
9 22 0.015 0.94 10.0 0.7 2 23 344 365 343 365 0.96
10 22 1.5e-05 0.00094 19.4 0.3 1 23 371 393 371 393 0.97
11 22 4.1e-07 2.6e-05 24.3 0.3 1 23 399 421 399 421 0.99
12 22 1.7e-07 1.1e-05 25.6 0.8 1 23 427 449 427 449 0.98
13 22 0.00039 0.024 15.0 2.7 1 23 455 477 455 477 0.98
14 22 0.00051 0.032 14.6 1.6 1 23 482 505 482 505 0.98
15 22 0.0088 0.56 10.7 0.1 1 23 510 533 510 533 0.96
16 22 0.00043 0.027 14.8 2.9 1 23 539 562 539 562 0.92
17 22 0.013 0.84 10.1 0.4 3 20 568 585 568 587 0.91
18 22 0.00042 0.027 14.9 5.3 2 23 588 609 587 609 0.97
19 22 0.0016 0.1 13.0 1.1 3 23 617 638 616 638 0.95
20 22 8.5 5.4e+02 1.3 1.4 3 20 643 660 642 664 0.88
21 22 2.3 1.5e+02 3.1 0.2 2 21 669 688 668 689 0.90
22 22 0.0013 0.086 13.3 0.8 2 23 697 717 696 717 0.95

Sequence Information

Coding Sequence
ATGGAAGGCTTCATCGTGAAATTAGATAAGATAGAAGTACACCAATGTAACAAATGCCCGAAAGTGTTTATGGAAAATAAAGGTCTCCAAGATCATTATGCAAGGCACGACGTGCAGGAGCAATTGTATCGGGAAAGAGTCATGAAGCATTCAGTAACACAATTACCACAAAACTACAATGACTTGAAGCCTCATAAATGTGAAGAGTGTGGCCTCAGGTTTGTGGAGAGCTCCACTCTCAACACCCACTTGAAAGTCCACGAGCCGTTCCCTCACATCTGCCACTGCGGCATTGGGTTCTACCAGGCGAAGGACCTTACTACCCACGGGAGGCTAGTCCACCCAACACACCAACTCAAGATAGAACCACCTGAACCTGAAATCAAATCAGAATTTGCTATCAaaccaaagaaaaaaagagCCAATTTAGGAGTAAAACCGAGACTATTAGCAAATATGGTATTTTCTAAGCCAAAACTTGAATCAAGAAGTAGACAAAGCGTTCTGATTCCAAAAAACGAAGATGGAGACTATGAATGCTATCTATGTGGGCAGGCTTACACagataaaactaaattttttgatCACATTAAATCTCATAAGGGAAACTGGCATCACCTCTGTGATAAGTGTCCATACAGCTCTCAAACTCTAGCAAATCTAATAGCGCATAAAAAGACACATGATCCCGGCCACAATGGAATATGGAAGTGTGatatttgcaaaaaaatatacaagaaaCAGAACTGTTTAGCAGGTCACATGAAGATCCACACGGGTGAAAATCATTCATCTGAAAAGAGCAGTGCTGGTAAAGAAAACAGTATGTTTTCCCAAAACAAAGATGGTGACTATGAGTGTTCCTTTTGTGGACAGATTcacaaagataaaactaaatattttgttCACATTAACTCTCACACGGGCCAGTGGCCCCATGTCTGTGACAAATGCCCCTACGGTGCTAAAACTTTAGCAGCCTTCATCGTCCATAACAAAACACATCAAGCCAACCACAATGGAATATGGAAGTGTgacacgtgccaaatgatcctcaAGAGCAGAGATACTTTAATAAATCACACATATAGGCACACCCGTGAAAAACCGTTCGCGTGCACTCTCTGCCCGAAAAGCTTCACACAAGGGGGGGCTCTAACGTCTCACTTGAAGAGACACGCAGGCACCCGCAACTTCGAGTGCGATCTTTGTAAGAAACGTTTCGTGGATAAAGGAGCTTTAATCCTTCATATGCGGACGCACCTCGGGTTGAAGCCGTACAATTGCAAGGATTGCGGAAAACTGTTCTCGGACCCATCCGCTTTCCAGCGGCACCGGCGCATCCACACGGGGGAGAAGCCTTACCGCTGCAAGTACTGTCCCAAGGCCTTCAGCGACTGCAGCGCTTCCCTGGTGCACACGCGCCGCCACGAGGGGCTCACCTTCACCTGCCGGATCTGCCGAAAACAACTGAGCGACCGCAATTCCTTGTATTTGCACATGAAAACCATCCACGAAAATAACACCTACGAATGTGATTATTGCGGACTGAAAACTAATCGAAAGCCTTATATTGGCGTACATATCAAAATTGTTCATCAGAAATTGAAAAGATATAATTGCAGCTACTGTGAGCAGCAGTTCTACTTTCAACATAATCTCAAAAAGCACATTGGACTTGTGCATGAAAAAGGGAATGGTTGTCCTATTTGTGGTCGGATGTTCAAAACTGATCATGCTCGGAGGCAGCACAAATGCATTTCATGTTCCATCTGCggtaaaacatttaaaagacaTTTAGATATGAAAATACATCACAAACGCCATTCTATTATGAAAGAACACGGGTGTCAGGACTGCCCGAGGAAGTTTTCAGAAATATCTGCACTGAACAAGCATCTTTCTGAATGTCATGGTAAAGTGGCTTGCGATCATTGCGGGGAGGAACACGATGGCAAGAGAAAACTAACAAATCACATCTGGAGCAAGCATATGTTGAGCTTGTACTGCGACGTGTGCATGAGACGTTTTTACACAGAAGCTGAATTCGGAAACCATAAAATGCGTAAGAATTGCGAAAAAAGAGTTTCATGCaaaatttgtaaattaaaatttaggAAATCCACTCTGGTGCGACATCTGATAGAACACATGAATGAGGGAGTAAAATGTGTCATATGTGGGTTACTGTTTAGGTGCAAGGATAGTATGATGCAACATTGCAAAACGGCTCACTGA
Protein Sequence
MEGFIVKLDKIEVHQCNKCPKVFMENKGLQDHYARHDVQEQLYRERVMKHSVTQLPQNYNDLKPHKCEECGLRFVESSTLNTHLKVHEPFPHICHCGIGFYQAKDLTTHGRLVHPTHQLKIEPPEPEIKSEFAIKPKKKRANLGVKPRLLANMVFSKPKLESRSRQSVLIPKNEDGDYECYLCGQAYTDKTKFFDHIKSHKGNWHHLCDKCPYSSQTLANLIAHKKTHDPGHNGIWKCDICKKIYKKQNCLAGHMKIHTGENHSSEKSSAGKENSMFSQNKDGDYECSFCGQIHKDKTKYFVHINSHTGQWPHVCDKCPYGAKTLAAFIVHNKTHQANHNGIWKCDTCQMILKSRDTLINHTYRHTREKPFACTLCPKSFTQGGALTSHLKRHAGTRNFECDLCKKRFVDKGALILHMRTHLGLKPYNCKDCGKLFSDPSAFQRHRRIHTGEKPYRCKYCPKAFSDCSASLVHTRRHEGLTFTCRICRKQLSDRNSLYLHMKTIHENNTYECDYCGLKTNRKPYIGVHIKIVHQKLKRYNCSYCEQQFYFQHNLKKHIGLVHEKGNGCPICGRMFKTDHARRQHKCISCSICGKTFKRHLDMKIHHKRHSIMKEHGCQDCPRKFSEISALNKHLSECHGKVACDHCGEEHDGKRKLTNHIWSKHMLSLYCDVCMRRFYTEAEFGNHKMRKNCEKRVSCKICKLKFRKSTLVRHLIEHMNEGVKCVICGLLFRCKDSMMQHCKTAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-