Obrm005154.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01001253.1:48322-87541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-05 0.001 19.3 5.3 1 23 168 190 168 190 0.97 2 17 0.31 20 5.8 3.7 7 23 199 215 199 215 0.95 3 17 4.1e-06 0.00026 21.2 8.3 1 23 221 243 221 243 0.97 4 17 3.2e-07 2e-05 24.7 2.9 1 23 249 271 249 271 0.98 5 17 4.5e-05 0.0029 17.9 6.7 1 23 277 299 277 299 0.97 6 17 8.7e-06 0.00055 20.2 6.4 1 23 305 327 305 327 0.98 7 17 0.0002 0.013 15.8 0.3 1 16 333 348 333 350 0.95 8 17 8.7e-06 0.00055 20.2 6.4 1 23 359 381 359 381 0.98 9 17 0.00013 0.0081 16.5 0.6 1 17 387 403 387 404 0.94 10 17 0.058 3.7 8.1 2.5 9 23 407 421 405 421 0.94 11 17 5.8e-05 0.0037 17.6 6.8 1 23 427 449 427 449 0.97 12 17 1.8e-06 0.00012 22.3 5.6 1 23 455 477 455 477 0.98 13 17 7e-06 0.00044 20.5 4.5 1 23 483 505 483 505 0.96 14 17 4.9e-06 0.00031 21.0 5.2 1 23 511 533 511 533 0.98 15 17 2.8e-06 0.00018 21.7 4.4 2 23 540 561 539 561 0.98 16 17 0.00032 0.021 15.2 0.3 1 23 568 590 568 590 0.96 17 17 8.8 5.6e+02 1.3 0.8 17 23 617 623 613 627 0.54
Sequence Information
- Coding Sequence
- ATGTCGAAGAACAAACTCAATTTGACCCTGCCACCGGGGTCAATTGACACGGCTCCGACTGCCACACCTAACATGACTCCACAGTTGAAGTCTGCCACGGCTActgaGTCAAGGCAACGGCGGTGTTGTGATGAAAGTGCGTCACAAGTCGACAGGCCTCATCATGGCTCGGAAGCTCATCCATCTGGAAGTGAAGCCGGCGATCAAGAAACAAATCATCAGGGAACTGAAGatactCCAGATACTCATCTGTCAGATCACTCATACCCGTTAACACAGATAAACCAGACGTACAGCCAGCCCGACTTCAATGCCCTCTTGCCAGCCGCTACTGTGAATGCAATGAACATGGAGGGCGCCGTCGTGAAGATATCGACGGGCGCGCCGGAGCACGATCTCCACGCCATGTACAAAGTGAACGTGGAGGATCTGTCGCAGCTGCTAGCGTACCACGAGGAGCACATGGTGAATCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTACGGTCACAGACCTATATCACAAAACGTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTACGGTTTGTGGGAAGAAGTATACTAGAAAGGAGCATTTGACGAACCATATGAGATCGCACACAAACGATACTCCGTTCCGATGCGATCTGTGCGGCAAGTCCTTCACCAGAAAGGAACACTACACCAATCACATTATGTGGCACACTGGTGAGACCCCGCACCGTTGTGACTTCTGCTCTAAAACGTTCACGCGCAAGGAGCACCTACTGAACCATGTGAGACAACACACGGGCGAATCTCCTCATCGTTGTAACTACTGCTCCAAGTCGTTCACGCGGCGCGAGCACCTCGTGAACCACGTGCGCCAACACACGGGGGAGACGCCCTTCCAGTGCGGATACTGCCCCAAAGCATTCACAAGGAAAGACCACCTCGATGTGAGACAACACACGGGCGAATCTCCTCATCGCTGCAACTACTGCTCCAAGTCGTTCACGCGGCGCGAGCACCTCGTGAACCACGTGCGCCAACACACGGGGGAGACGCTCTTCCAGTGCGGACACTGCCCCAAAGCATTCACAAGGAAAGACCACCTCAGTAACACTTTTTCGTTCACGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTTCTGCGCCAAGTCCTTCACCAGGAAGGAGCACCTCACCAACCATGTCAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCCCGCGCGCGTTCTCGAGAAAGGAGCATCTGAACAGCCACTTGCGGCAGCACACGGGCGCCACGCCGCACGCCTGCTCCTATTGCAGCAAGGCCTTCACGAGGAAGGAGCATCTCGTCAATCATGTGCGGAAACACACCGGGGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCATTCTCCCGCAAGGAGCATCTCACGAATCACGTGAACCTGCACACTGGGGAGACGCCCAACAAATGCCCGTTCTGCACTAAAACCTTCTCTAGAAAGGAACACCTTACCAACCATGTCAGGTATCACAGCTCCGGCGAGCGTCCATTCAGTTGCGGCGAATGCGGCAAGTCATTCCCGCTGAAAGGAAACCTCTTGTTCCATGAGAGATCCCACAACAAAGGCCCGAGGCCGTTCCGATTCCTAACTAGGCCTTACACTTCGCGCCACTGTATATTAGGCCCAAACGAGCTCGCAAGACATCTGCTAACCCACCGGCGGGTCCATGCCGAGGCCGGCGAAGAAGGTGCTGCTGAAACCCCGATGGAAACTGAAGAGTGTCTGACCGTTACCACGGACTGCACTAACAAATGCATCAAGATCTTCAGTAGAAAATGGACCAACTGA
- Protein Sequence
- MSKNKLNLTLPPGSIDTAPTATPNMTPQLKSATATESRQRRCCDESASQVDRPHHGSEAHPSGSEAGDQETNHQGTEDTPDTHLSDHSYPLTQINQTYSQPDFNALLPAATVNAMNMEGAVVKISTGAPEHDLHAMYKVNVEDLSQLLAYHEEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGTVTDLYHKTFTRKEHFMNHVMWHTGETPHHCTVCGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHYTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLDVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETLFQCGHCPKAFTRKDHLSNTFSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNSHLRQHTGATPHACSYCSKAFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRYHSSGERPFSCGECGKSFPLKGNLLFHERSHNKGPRPFRFLTRPYTSRHCILGPNELARHLLTHRRVHAEAGEEGAAETPMETEECLTVTTDCTNKCIKIFSRKWTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01099990;
- 90% Identity
- iTF_01099990;
- 80% Identity
- iTF_01099990;