Obrm009353.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01003077.1:1065-15670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 39 0.15 9.5 6.8 0.3 2 23 88 110 87 110 0.95 2 39 1.5e-05 0.00092 19.5 0.5 1 23 115 138 115 138 0.96 3 39 1.9 1.2e+02 3.3 6.1 1 23 141 164 141 164 0.94 4 39 0.00026 0.016 15.5 0.6 1 23 170 193 170 193 0.95 5 39 0.003 0.19 12.2 0.6 2 23 201 223 200 223 0.95 6 39 0.58 37 5.0 0.6 1 23 228 250 228 250 0.98 7 39 2.5e-08 1.6e-06 28.1 1.1 1 23 256 278 256 278 0.98 8 39 0.1 6.5 7.3 0.5 1 23 360 382 360 382 0.96 9 39 0.46 29 5.3 0.1 3 23 454 475 452 475 0.93 10 39 0.00036 0.023 15.1 0.2 3 23 483 504 482 504 0.98 11 39 0.0019 0.12 12.8 0.6 3 23 511 532 510 532 0.95 12 39 0.0079 0.5 10.8 2.7 1 23 538 561 538 561 0.98 13 39 0.0013 0.085 13.3 2.2 2 23 568 590 567 590 0.95 14 39 0.052 3.3 8.3 1.3 1 23 596 618 596 618 0.93 15 39 0.0029 0.18 12.2 0.8 1 23 624 647 624 647 0.89 16 39 0.079 5 7.7 5.6 1 23 734 756 734 756 0.98 17 39 0.075 4.8 7.8 0.2 2 23 781 803 780 803 0.94 18 39 0.033 2.1 8.9 0.5 2 23 824 846 823 846 0.94 19 39 0.4 25 5.5 2.2 3 23 854 874 852 874 0.88 20 39 0.72 46 4.7 0.4 2 23 880 901 879 901 0.88 21 39 0.11 6.9 7.3 0.4 2 23 906 928 905 928 0.95 22 39 0.024 1.5 9.3 1.3 2 21 935 954 934 955 0.95 23 39 0.0022 0.14 12.6 4.3 1 23 991 1014 991 1014 0.96 24 39 0.037 2.3 8.7 0.0 1 23 1112 1135 1112 1135 0.96 25 39 0.015 0.97 10.0 5.2 3 23 1140 1161 1139 1161 0.96 26 39 1.8 1.2e+02 3.4 0.2 2 23 1167 1189 1166 1189 0.92 27 39 0.0026 0.16 12.4 0.4 2 23 1197 1219 1196 1219 0.95 28 39 2 1.3e+02 3.3 0.0 2 19 1226 1243 1225 1245 0.92 29 39 0.0083 0.53 10.8 0.7 6 20 1257 1271 1255 1273 0.93 30 39 3 1.9e+02 2.7 2.4 1 23 1348 1371 1348 1371 0.92 31 39 0.019 1.2 9.6 0.6 2 20 1397 1415 1396 1419 0.87 32 39 0.33 21 5.7 3.3 2 23 1442 1464 1441 1464 0.95 33 39 0.00082 0.052 13.9 0.2 1 23 1471 1494 1471 1494 0.95 34 39 0.0018 0.11 12.9 1.4 2 23 1500 1522 1499 1522 0.97 35 39 0.0047 0.3 11.6 0.1 2 23 1528 1550 1527 1550 0.95 36 39 0.0038 0.24 11.8 0.4 1 23 1557 1580 1557 1580 0.96 37 39 0.0054 0.35 11.4 0.8 2 23 1587 1608 1586 1608 0.93 38 39 0.00021 0.013 15.8 1.6 1 23 1614 1636 1614 1636 0.98 39 39 2.5e-06 0.00016 21.9 2.6 1 23 1642 1664 1642 1665 0.96
Sequence Information
- Coding Sequence
- ATGCGAGATTGCGATGTCTTGAAAgagcacacacacaaacacaactcCGTCGATCTCGACAGCTTTTTAAAGAAGCACATCATAACGAAAGATGTGCCGGTCAAGATTGATGTGACCAACATCGCGTGCAACTACTGTCCGGATGTTACCATCACTAGTTTAGACGAAATGGTCTCACATGTCGTGAACTGTCACGGCGAGGAGTACGACAACACTGTGGAACTATGTCTCTTCCCTTTCGTGCTGAGTAAAGACTTAATGCAGTGCGGGCTGTGTGATTCCGGCTACGACAATTTCACATCACTTATAACGCATATGTATAAGCAGCACATAACGCATTCCTTTATGTGTCAGATCTGCGGTCTTAGCTTCAAAGACCAGGTCCGTTTGAAGCGGCACATTAGCATCCGTCACGTCGGACACCGCTGTACATTCTGTGATAAGATCTTCGATGCTTTCCACAAACTGGACAAGCACAAAGAAAGATTCCACGGCCAGGTTAAGACCTATGAATGTAGCTTGTGCAGCGCCAAGTTTAAGAATAACTATCAGCTGAGAGTGCATTTGGGGAAGGTGCATAATGTCGAGAAGTACAGGATCAAATGCGAGTATTGCGAAAAGGTCTGCACGACTAAAGGAGCCATGGTGCTTCACGTGCAAAGCATGCATTCAGAATTCAAATACCAATGCGATTTGTGCGAGTACACGACCGGCATTAAATGGCTGGTGAAGCTACACAAACGGAAGCATTTTGATGTGAAAGATTATTCCTGTAGCATTTGTGATAAATCGTTTGGGAGGTCGAGTAACCTTAGGACGCATATGAAGGTGCACGCCGGAGAACCTAGAGGTGGCCAGAAAGCGAAACTATTGATAAAAACTGCACGACCGACTCCTGTTCCGGCTCCGGTAGCCAGCGCCAAGCGGCCAGCCAGAGACCTGGCGCCATCGGCCAGTGTTCTCTCGACAAAACCCAAAGGGTTGTCATCGAGAGAGAAACGGAACATCATGATTAAAAACGTACTCGAGGTTTTGCTGAAGACGACTGTGATGCCATTCAGATGGCTTAAAAGCTCCTACCGTTGCTTCTACTGCTACGACATATTCCAAGAAGCATCTGACCTGAAAGCGCATCAAACTGCGCATACGGATGACTCTGTCAAAGAAAAGGCGATGAAGAACTACTGGGAACCGGTAGTTTACGTCGACATTTCTAATATGAAATGCAATCTATGTTCCGGAGAAATAACAGACCTGTACGATATGGTCGACCATCTAATAGCGAGACATGGTGCGGTGTACAATAAAGACGTGGGGATATGCATGGTCGCGTTTAAACTGAACAACTTTGACGTCAGCTGTCTCGCTTGCGGCGCCAGCTTCTACACTTTCGGACCGCTCCTTAACCATACCAACAAGGACCATAAAGGCACTTCGGTGATACTTTGCGAGATCTGCGGGCAGAACTACAAAGACCAGAATCTTTTGCGTTTGCACGTAAAAACCGCTCACGACAATAGTGGGATGCTCTGCCCTGAATGCGGTGACAAATTCGACACAAGATCAAAACTAAAAACTCATCAGATAAACAACCACGGATTGGAAAGGAAGTTCAAATGCCTCGTCTGCGACCAGACGTTCGGAAGTCACTACAAGAGATCTCGGCACATGGCGACCGATCATAAGAACAGACAAGAGATCAAATGCTTGCACTGCCCTAAGACTTTTGTGTTTAGAAGCATGATGATGACTCATTTACGAGATACTCATTTGAAAGTCCGCAATCATATCTGTGGTGTGTGCGGTTGGAAGGCGTTTAACAGTAACAGGCTCAAGAATCACATGTACAAGCATAGCGGAGAGAAGAATTTCAAATGTGACGGGTGCGACAAGGCCTTCACAACGAGAAAGATAATGAAAGCACATTTTGCGCGAATGCACAAATCGTCCCAGCAGTCTGCTTCTGCTGTGCCGGTCATGCATTATAATGCTTATGAACTGCAATATCCCGAAACTTCTGAATCGACGCAAGAAACTCTAACAGAGTCTACCGAGGACATGCAAGTGCCCTCAGACACGGACTCAGACGATCAGAGAGAGATCTTACACACCTCAGAGGCTCTGCACAAACTGAGAACTAACGTCACGAACCTGATCCGAGGTTCAACGGCCATGCCTTTTAGGTGGCTCGTCACCGCTTACAGATGCTTCTACTGCTACGACGTGTTCCACCATCAAGATGAGCTCAAATCACATCAAATGCTTCACGATGACGCAGAAATCGTGAAAGTCATGAACAAATTTTGGGATTCAACTGTTTATATAGACGTGTCTCTTCTAAAATGCAAACTGTGCTCGAAAACTATTGATTCAATAGACGATTTAATTGACCATTTGATGGAAAAACACAAAATGCCGTATAACAAAGACGTAGTCAGCTTCCAGGCCTTCAAGCTGGGCGCTACACTATCGTGTTCTATTTGTAGGCTGACATTTGTAAATTTCGCAACGCTTCTCGTGCATACGACTTCGAAGCATCAGCATAGCGAGGATTGCCTTTGCGACGTATGCGGCAGGACGTTCAAACCGCATCAGATAAGGATGCATCTAGCGAACGAGCATAGAAGCAAGGTGGTTAGATGCACGATGTGTGACGAAGAGTTTAGCGTGCACGCTATAAGGACGCATATGGTGCGAGTGCACAAGAAACGGCTCAAATGCCAGATGTGTTCGGAGACTTTCGAGACGGTGTACAAGCGCGCGGCGCATCTTACAACCGTCCACAAAGGCAGAGAGCCGGTGAAGTGCGCGCATTGTTCCAATGTGTTCTATTTCCAGAGCACCATGAGAAGGCACATCAAACAGatttatatagAGGTGGCTTTGAAGAATGAGCAGCAACTTGCAGCGTTGCTTATAACTATCATTCAGGACTCCACGATCGTGCCCTTCCGATGGAACAAGGGCCAGTTCATGTGCTTCTACTGCCCCTCCACTTTCACCACGAGCAAGTGCCTGAGACGCCACAACAGAATCGGCCACGACGAAATCAATATCACGAACATCATCACGCAGGTCGCGTATAACGACCGCAGAATCAAACTCGATGTGGCGACAGCAAGATGCAACCAATGCGACCAACATATCATAGATATAGCAGACTACATCGAACATTTATGGGAGAAACACGACGCGGAATTCGACGCAGACGTCGCGAACCATTTCACCTCCTTCAAACTGTCCGACGACGGAATGAGCTGCATCGAATGCGGGCAACACTTCCAATTCTTCGGGCCTTTGCTGATTCACACCAATAAAAAACACATGGACAAGTATATATGCGAGATTTGCGGGCAAGGGGTCGTTGGCAAAGTTAATATATACAACCACATGAAGCAAATACACGCCGTTAAACTTTGCAAGCACTGCAACCAGACCTTTCACACGCAATACGCACTTTTTCAACACGTGTCCTCGAAGCACAAAACTGATTCTTTGAAGTGTACTATCTGCGCGGAGATTCAGCCGAATCGCTATAAAATGAAGCGACACATGGCTCTAGTGCACGACTGCAAGGACTCACAGATAGTCTGTGAAATCTGCTCTAAAATATTTACGCGGAACATTAAGTATGTTCAGCATAAACAACGCGTGCATTTCCGGCAGAAGAACCTATCATGTGATGTTTGCGGGTACGGCGCGTATGACGCAGCGGCGCTAAAGCTCCATGTGGTCTGTCACGACGAATCGAAGCCTTTCTCGTGTGCGTGCGGGAAGACCTTTCGGAGAAATAAGAATCTGATTATGCACAAAACTCGTTGTTCGGGACAGAACCTTAGTATCTGGGGAGACGGCGTGGCGGTGCCGCCGGGTTTAGCTGGCACGGACGTGCAACGCAGGCCGGAGCTCGATGACGCTTCATACGTGGACGCAGTTATGGAGAAGATGTCTGAATTGCAACGGAAGGAAGATCTCGTGAGTCTTATGTCCGCTATCATTGAGAACTCCACGGCCGTGCCGTTTCGCTGGCACTGCAGCAAGTTCGCCTGCTTCTTCTGCTGCTTCCCTTTCGAGGAGAGCTCCAAGCTGAAGGCGCACTATCGCGATGAACACAGCGACGCTAGGATCAGAAGCGCGTTCCGAGGCGTCATCAAGAACAGCAAAGTGAAGCTCGAAATCTCGAACCTAACTTGCAAGAAGTGCTCCAAAAGTTTCACCGCTACAGACGATTTACTAGATCACTTCGTCCAAATCCACTCCCTGAAACTGAACCTCGAATTAAAGAACCAAATCTTCGCGTACAAACTGTCGGACGAAAAAATGGAATGTCTGCATTGCGAAGAAGAATTCAGATTTTTCGGAACGCTCCTCAAACACACCCACAAGATACACAACAAGACGAACGAGACTTTCCTCTGCGAGATGTGCGGACAGGGTTTCGTTACGAAGACCAGCGTAGCGAGCCACTTGAAGACTGTCCATTCTAAAGCCGACGTGACCTGCGACAAGTGTAACATAGCATTCAAGAACGTAAACGCGTTGCAACTGCACCATCGCCGAACGCACAAAGCTTACATGCTGAAATGTCCCAAGTGCCCAGAGGTTCTGACCAGCCCGTATCTCAGAAAGCGTCACCTTGCGAAagtgcatgatgtgaaacggttCCAATACGAATGCGATTTGTGCAATATCATGTTCACGCTGAAGAGTCGCTTGCTCGCGCACAAATCGAGAGTCCACATGAAGGAGAAAAGTTTAAGCTGCGATTATTGCTCGTACAAAGCGTTTAACAAAGAAAGCTTGACGCGGCATATGGTGTCCCACGACGATTCCCGCCCCTTTCCGTGTGAGTTTTGCAAGAAGGCTTTTCAAAGGAAGAAAACCTTGGATCTTCATCAGAGGATCCATACTAATGATAGGAGGTATACGTGCAAGGAGTGTGGCAAGGCGTTTGTGCAGTACACGAGTCTGAAGCTGCACTACAGAGTGCATCATTCTAAAGAGCCGCCGGTCGGCACCTTGGATGTTGCTGGTCACTGGCTGCCGAATCAC
- Protein Sequence
- MRDCDVLKEHTHKHNSVDLDSFLKKHIITKDVPVKIDVTNIACNYCPDVTITSLDEMVSHVVNCHGEEYDNTVELCLFPFVLSKDLMQCGLCDSGYDNFTSLITHMYKQHITHSFMCQICGLSFKDQVRLKRHISIRHVGHRCTFCDKIFDAFHKLDKHKERFHGQVKTYECSLCSAKFKNNYQLRVHLGKVHNVEKYRIKCEYCEKVCTTKGAMVLHVQSMHSEFKYQCDLCEYTTGIKWLVKLHKRKHFDVKDYSCSICDKSFGRSSNLRTHMKVHAGEPRGGQKAKLLIKTARPTPVPAPVASAKRPARDLAPSASVLSTKPKGLSSREKRNIMIKNVLEVLLKTTVMPFRWLKSSYRCFYCYDIFQEASDLKAHQTAHTDDSVKEKAMKNYWEPVVYVDISNMKCNLCSGEITDLYDMVDHLIARHGAVYNKDVGICMVAFKLNNFDVSCLACGASFYTFGPLLNHTNKDHKGTSVILCEICGQNYKDQNLLRLHVKTAHDNSGMLCPECGDKFDTRSKLKTHQINNHGLERKFKCLVCDQTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGWKAFNSNRLKNHMYKHSGEKNFKCDGCDKAFTTRKIMKAHFARMHKSSQQSASAVPVMHYNAYELQYPETSESTQETLTESTEDMQVPSDTDSDDQREILHTSEALHKLRTNVTNLIRGSTAMPFRWLVTAYRCFYCYDVFHHQDELKSHQMLHDDAEIVKVMNKFWDSTVYIDVSLLKCKLCSKTIDSIDDLIDHLMEKHKMPYNKDVVSFQAFKLGATLSCSICRLTFVNFATLLVHTTSKHQHSEDCLCDVCGRTFKPHQIRMHLANEHRSKVVRCTMCDEEFSVHAIRTHMVRVHKKRLKCQMCSETFETVYKRAAHLTTVHKGREPVKCAHCSNVFYFQSTMRRHIKQIYIEVALKNEQQLAALLITIIQDSTIVPFRWNKGQFMCFYCPSTFTTSKCLRRHNRIGHDEINITNIITQVAYNDRRIKLDVATARCNQCDQHIIDIADYIEHLWEKHDAEFDADVANHFTSFKLSDDGMSCIECGQHFQFFGPLLIHTNKKHMDKYICEICGQGVVGKVNIYNHMKQIHAVKLCKHCNQTFHTQYALFQHVSSKHKTDSLKCTICAEIQPNRYKMKRHMALVHDCKDSQIVCEICSKIFTRNIKYVQHKQRVHFRQKNLSCDVCGYGAYDAAALKLHVVCHDESKPFSCACGKTFRRNKNLIMHKTRCSGQNLSIWGDGVAVPPGLAGTDVQRRPELDDASYVDAVMEKMSELQRKEDLVSLMSAIIENSTAVPFRWHCSKFACFFCCFPFEESSKLKAHYRDEHSDARIRSAFRGVIKNSKVKLEISNLTCKKCSKSFTATDDLLDHFVQIHSLKLNLELKNQIFAYKLSDEKMECLHCEEEFRFFGTLLKHTHKIHNKTNETFLCEMCGQGFVTKTSVASHLKTVHSKADVTCDKCNIAFKNVNALQLHHRRTHKAYMLKCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNIMFTLKSRLLAHKSRVHMKEKSLSCDYCSYKAFNKESLTRHMVSHDDSRPFPCEFCKKAFQRKKTLDLHQRIHTNDRRYTCKECGKAFVQYTSLKLHYRVHHSKEPPVGTLDVAGHWLPNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -