Obrm013086.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01005937.1:27507-29423[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00028 0.25 11.3 4.3 2 41 89 124 88 126 0.91 2 5 0.012 11 6.1 1.7 14 39 128 150 121 153 0.83 3 5 0.016 14 5.7 6.1 3 40 146 188 144 191 0.61 4 5 5.9e-05 0.053 13.5 0.5 18 43 196 232 189 233 0.95 5 5 0.078 70 3.5 0.1 14 38 235 256 233 257 0.84
Sequence Information
- Coding Sequence
- CTAACACAAGACACGGTTAATCTCCTCAGCAAAGGAATCTCTAGAAAGTTGTTAGTTTCTCCCATGGAGTCCACGTGCACGCCTCAAGCTGACAGCACTCATGTGGAAGTAAAAACAGAGCCATGCGCGGTCAAACAAGAACCTATGAAGTGCGAGGAGACTTCAGGAGATAGCAAGCTCTGTGAACAAGAAACATGTGCACCTGAAGGCTCCGTGGGCCATGCTACCAGCATTCAAACAAAACCTTCACTTATAAACAAGATAAAAGCAAAAAAACACTTGAGAATTCACAAAAGAGATAAATCATCTACGTGTGAAATCTGCGCCAGAACATTATCTTGTAAGAAATCATTGAGAGCTCATATGGAGACTCACACGGGGGAGAAGCTATATGTATGTGGACATTGTGACAAAAGATTTCTAGGAATTGCTGGATTATGGTCTCACATAGAAATTCATATAGAAAAAAGGCCACGTTATGGTTGTGACATATgtgAAGGaatcaaatgtaatgaatgtgGAAATAAATTTAACAGTACGCGGGCCCTGAAAAAGCATATGGCGACCCACAAAGGAGTTCAATTTGCATGCAGCCTGTGCGATAAAACGTTCACTCGGAAGTATAACTGGGCTTTACACATGAGAGCACACGCTGGCAATAAACCTAATTTGGTGAGACATATAAACACAATGCATGAAGAAAGTACGCGATTTGCTTGCGACTTGTGTGATAATTCGTTCGCTCGACGGTCCAATTTGCAAAAACACGCACTAGCACACGGTTTATAA
- Protein Sequence
- LTQDTVNLLSKGISRKLLVSPMESTCTPQADSTHVEVKTEPCAVKQEPMKCEETSGDSKLCEQETCAPEGSVGHATSIQTKPSLINKIKAKKHLRIHKRDKSSTCEICARTLSCKKSLRAHMETHTGEKLYVCGHCDKRFLGIAGLWSHIEIHIEKRPRYGCDICEGIKCNECGNKFNSTRALKKHMATHKGVQFACSLCDKTFTRKYNWALHMRAHAGNKPNLVRHINTMHEESTRFACDLCDNSFARRSNLQKHALAHGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01100102;
- 90% Identity
- iTF_01100102;
- 80% Identity
- iTF_01100102;