Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.014 13 5.8 1.5 6 39 5 34 4 37 0.82

2 10 6.4e-05 0.057 13.4 2.7 3 29 30 54 29 64 0.84

3 10 5e-05 0.044 13.7 1.7 5 38 59 89 57 94 0.85

4 10 0.034 30 4.7 1.5 15 39 97 118 90 124 0.81

5 10 0.025 22 5.1 1.6 16 40 130 151 124 153 0.70

6 10 0.026 23 5.0 1.5 3 40 146 179 144 185 0.87

7 10 0.03 27 4.8 3.1 14 30 184 200 172 209 0.76

8 10 0.53 4.7e+02 0.8 2.3 13 38 211 233 201 237 0.77

9 10 0.00036 0.32 11.0 0.4 16 41 242 264 239 265 0.90

10 10 3.9e-05 0.035 14.1 1.6 13 44 267 295 263 295 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.014	13	5.8	1.5	6	39	5	34	4	37	0.82
2	10	6.4e-05	0.057	13.4	2.7	3	29	30	54	29	64	0.84
3	10	5e-05	0.044	13.7	1.7	5	38	59	89	57	94	0.85
4	10	0.034	30	4.7	1.5	15	39	97	118	90	124	0.81
5	10	0.025	22	5.1	1.6	16	40	130	151	124	153	0.70
6	10	0.026	23	5.0	1.5	3	40	146	179	144	185	0.87
7	10	0.03	27	4.8	3.1	14	30	184	200	172	209	0.76
8	10	0.53	4.7e+02	0.8	2.3	13	38	211	233	201	237	0.77
9	10	0.00036	0.32	11.0	0.4	16	41	242	264	239	265	0.90
10	10	3.9e-05	0.035	14.1	1.6	13	44	267	295	263	295	0.92

Coding Sequence: GCTATCTCAGAACACTTCCTCGCCTTCTCGCCGGGCAACAAGTACAACTGTCAAACCTGCTTCAAGTCCTTCGCAAACAGCACCAACTTACACCGCCACGTCTTAATCCACAGTCGGGTAAAGCTAGAATGCAACATTTGCGGGAAACAATATGTCGGGCAAGAATTACTAGATAAACATTTAGAAAAACATGACAGACCAAAGAAACTTTACCCCTGTGAAATATGCAACAAGAAATTCAAATCGTCATCAAATTTGATGCAGCACAAAAGGGTACATGATACTGTCAAAGcttttaaatgtgaattatgTCAAAAAGGGTTTTCTATGCGAGCTAATTTGATTAGACATCAAGGCAGGTCGCGTTGTAAGCCCGAAGAGGAAGTATCATTAATATGCAAAGTCTGTAATAAAGTGTTCGAAAAATCGTTCCTACTTAAAAGTCACTTAAGGAAACACGACACGGATAAGCCGTACCAATGTGATATGTGCGGACTATCTTTTAAGTATAAAAGCGCTATAATTCGACATATGCAATGGCATTCAGGCCACAAACCGTACAAATGTCAGTATTGTACAAAAACCTTTACACACTCCGGTCTAATTAAACCTCACTTAAGAATACATACCGGGGAAAAACCTTACCAATGCTCCATTTGCTTAAAGCTCTTCACTCACAAACACAATATGGAGCGACACAAGGTAAACCACGGGAGAATTAAGCGTCTCGTATGCGATATATGCAATAAAAAGTTTCCAAGAGAGAGTCGATTGAAATATCACATGAAGACGCATATCGAAGAGAAATTTTTCGATTGTGGGAAGTGTGATAAGAAATTCACCCATAAGTCTAATGTGATAAGGCATTATGAGAGGAAACATCCCGGATTCACTTACAACGGAAAGGACACTGACGCCTCTGTGGCTATGAAGGTCTGGGACAAAtttATGTCTCCTTACCCCAAAAGCTACAGCTGCAAGGTAATTTACCCA
Protein Sequence: AISEHFLAFSPGNKYNCQTCFKSFANSTNLHRHVLIHSRVKLECNICGKQYVGQELLDKHLEKHDRPKKLYPCEICNKKFKSSSNLMQHKRVHDTVKAFKCELCQKGFSMRANLIRHQGRSRCKPEEEVSLICKVCNKVFEKSFLLKSHLRKHDTDKPYQCDMCGLSFKYKSAIIRHMQWHSGHKPYKCQYCTKTFTHSGLIKPHLRIHTGEKPYQCSICLKLFTHKHNMERHKVNHGRIKRLVCDICNKKFPRESRLKYHMKTHIEEKFFDCGKCDKKFTHKSNVIRHYERKHPGFTYNGKDTDASVAMKVWDKFMSPYPKSYSCKVIYP

Sequence clustering based on sequence similarity using MMseqs2