Obrm015818.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01010285.1:3851-8460[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-12 1.7e-09 37.2 0.0 4 39 194 230 191 234 0.89 2 2 5e-05 0.044 13.4 0.6 2 27 246 271 245 271 0.93
Sequence Information
- Coding Sequence
- ATGCCTGGCTCCGGTACTGCTGCCGTAAAATGTGAACCTCCTTCTGATGAAGAAGACAACAGTCCTCAGTTACCAGGCCTCTTCCTGAATATCACGCTTCCCTCAGAATTCCATTCGCTCACTTCTGTCAAGGCAGAAGTAGGAGGCCACGTCACCGACGAGGCGACAGAGTCCAGAGGTGCTGGAGGAGCTGGTCCCGGCGCCGGCAGCACCCGCAGCCACGCCCGTCTGCGTGAAGCAGGAGCCGGCGGGGAGCCCCGCGCCCAGCCTGGAGACCCTGGAGCCCGCGCCGCATCGCACGGTAACACGCCCGTCTGCGTGAAGCAGGAGCCGGCGGGGAGCCCCGCGCTCAGCCTGGAGACCCTGGAGCCCGCGCCGCATCGCACGAGCTCGTTATTGGAGAGACACATGGCGGTAATGAGGTCACCTGAAGCGCCGCACTCCGGCAACTTCACCCCACTCTCACTTCACGCAGTCAAGGACGAGCCGACTTCTGAAGGAGGTAGTGACGAGCTGGGTGACTCGAGCGGGTTGACGGAGCTCGCGACGCGCGGCAGTCCCAAGAGCTGGACGCAGCACGACATGGACAGCGCACTGGATGCGCTCAGGAACCGCAACATGAGCTTGACTAAGGCTTCATCGCGATACGGCATACCGTCGACGACTCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCACCAAGTCGTGGAGCGAGGCCGACCTGCGCGGGGCGCTCCACGCACTGCGCGCCGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCGTATGGTTAG
- Protein Sequence
- MPGSGTAAVKCEPPSDEEDNSPQLPGLFLNITLPSEFHSLTSVKAEVGGHVTDEATESRGAGGAGPGAGSTRSHARLREAGAGGEPRAQPGDPGARAASHGNTPVCVKQEPAGSPALSLETLEPAPHRTSSLLERHMAVMRSPEAPHSGNFTPLSLHAVKDEPTSEGGSDELGDSSGLTELATRGSPKSWTQHDMDSALDALRNRNMSLTKASSRYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALHALRAGAISANKASKAYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -