Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.0056 5 6.8 0.0 27 39 7 19 4 22 0.89

2 3 6.6e-11 5.9e-08 32.2 0.1 2 30 37 65 36 66 0.94

3 3 1.1e-06 0.001 18.7 0.3 11 30 68 87 67 88 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.0056	5	6.8	0.0	27	39	7	19	4	22	0.89
2	3	6.6e-11	5.9e-08	32.2	0.1	2	30	37	65	36	66	0.94
3	3	1.1e-06	0.001	18.7	0.3	11	30	68	87	67	88	0.91

Coding Sequence: ATGTATTCTGATTTGGCAGGTATCCCCAGCAGCACGCTTTACAAGATAGCGCGTCGCGAGGGCATCCGCCTGGCGGCGCCCTTCAACGCGGCGCCCGTCGCGTGGCGCCGCGGGGACCTGCAGCGCGCGCTGGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCGCCGGCCGCGCCTCCGTGCATCAAGCTGCTTCGCACTATGGAATACCTACTGCTAATTACAAACTAGCAGATAACTTTGAAGATTCGCTGACGCTGATCCAACAGAATTGGTCTACAATA
Protein Sequence: MYSDLAGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALAAIRAGRASVQRAASHYGIPTGNYIRAGRASVHQAASHYGIPTANYKLADNFEDSLTLIQQNWSTI

Sequence clustering based on sequence similarity using MMseqs2