Obrm012935.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01005806.1:2204-4652[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5e-06 0.0013 18.3 0.0 21 39 17 36 16 40 0.85 2 14 2.4e-11 2.1e-08 33.6 0.3 2 39 52 89 51 92 0.92 3 14 5.2e-10 4.6e-07 29.4 0.1 2 30 107 135 106 136 0.94 4 14 4.1e-08 3.6e-05 23.3 0.0 2 30 154 182 153 183 0.93 5 14 5.7e-05 0.05 13.2 0.1 17 30 191 204 187 205 0.88 6 14 4.1e-08 3.6e-05 23.3 0.0 2 30 223 251 222 252 0.93 7 14 5.7e-05 0.05 13.2 0.1 17 30 260 273 256 274 0.88 8 14 0.17 1.5e+02 2.1 0.0 21 30 286 295 280 296 0.81 9 14 5.7e-05 0.05 13.2 0.1 17 30 304 317 300 318 0.88 10 14 0.021 18 5.0 0.1 17 30 326 339 322 340 0.87 11 14 5.7e-05 0.05 13.2 0.1 17 30 348 361 344 362 0.88 12 14 6.8e-06 0.006 16.2 0.2 11 30 364 383 363 384 0.91 13 14 6.8e-06 0.006 16.2 0.2 11 30 386 405 385 406 0.91 14 14 6.8e-06 0.006 16.2 0.2 11 30 408 427 407 428 0.91
Sequence Information
- Coding Sequence
- ATGGGCTCAAATAACACCCCTGTTCGTTTCAAGTGTTGTGTTGATCTCCAGGCTTCATCGCGATACGGCATCCCGTCGACGACTCTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGCCACCAAGTCGTGGAGCGAGGCCGACCTGCGCGGGGCGCTGCACGCGCTCCGCGCCGGGGCCATATCCGCCAACAAGGCCAGCAAGGCGTATGGTATTCCCAGCAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCCGCCTGGCGGCGCCTTTCAACGCGGCGCCCGTCGCGTGGCGCCGCGGGGACCTGCAGCGCGCGCTGGCCGCCATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCCTGGCGGCGCCCTTCAACGCGGCGCCCGTCGCGTGGCGCCGCGGGGACCTGCAATGCGCGCTGGGCGCCATCCGCGCCGGCCACGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACAGTTGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACACCCGCCTGGCGGCGCCCTTCAACGCGGCACCCGTCGCGTGGCGCCGCGGGGACCTGCAATGCGCGCTGGGCGCCATCCGCGCCGGCCACGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACAGTTGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACAGCTGCGCCGGCCGAGCCTCCGAGCAGCGAGATGCCTCGCACTATGGAATACCTACTGGTAATTACAGCTGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACAGCTGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACAATGGAATACCTACTGGTAATTACAGCTGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCGCCGGCCGCGCCTCCGTGCAGCGAGCTGCCTCGCACTATGGAATACCTACTGGTAATTACATCCGCGCCGGCCGCGCCTCCGTGCAGTGA
- Protein Sequence
- MGSNNTPVRFKCCVDLQASSRYGIPSTTLWQRAHRLGIDTPKKEGATKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLQRALAAIRAGRASVQRAASHYGIPTGNYIRLAAPFNAAPVAWRRGDLQCALGAIRAGHASVQRAASHYGIPTGNYSCAGRASVQRAASHYGIPTGNYTRLAAPFNAAPVAWRRGDLQCALGAIRAGHASVQRAASHYGIPTGNYSCAGRASVQRAASHYGIPTGNYSCAGRASEQRDASHYGIPTGNYSCAGRASVQRAASHYGIPTGNYSCAGRASVQRAASHNGIPTGNYSCAGRASVQRAASHYGIPTGNYIRAGRASVQRAASHYGIPTGNYIRAGRASVQRAASHYGIPTGNYIRAGRASVQRAASHYGIPTGNYIRAGRASVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -