Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:7881526-7904340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.044 3.2 7.8 0.2 1 19 125 143 125 145 0.90

2 12 0.011 0.77 9.7 5.2 2 23 278 300 278 300 0.91

3 12 4.1 2.9e+02 1.6 7.6 3 23 456 477 455 477 0.95

4 12 0.22 16 5.6 2.9 1 23 530 553 530 553 0.94

5 12 0.0012 0.087 12.7 0.2 2 23 601 623 600 623 0.96

6 12 0.00041 0.029 14.2 0.3 3 23 647 668 646 668 0.96

7 12 0.03 2.1 8.3 8.4 2 23 733 755 732 755 0.95

8 12 0.072 5.2 7.1 4.2 3 23 770 791 768 791 0.92

9 12 6.6e-05 0.0048 16.7 0.2 2 23 845 867 845 867 0.96

10 12 0.33 24 5.0 0.5 1 23 946 968 946 968 0.97

11 12 0.00087 0.063 13.2 1.7 2 23 982 1004 981 1004 0.96

12 12 0.0047 0.34 10.9 0.8 1 23 1079 1102 1079 1102 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.044	3.2	7.8	0.2	1	19	125	143	125	145	0.90
2	12	0.011	0.77	9.7	5.2	2	23	278	300	278	300	0.91
3	12	4.1	2.9e+02	1.6	7.6	3	23	456	477	455	477	0.95
4	12	0.22	16	5.6	2.9	1	23	530	553	530	553	0.94
5	12	0.0012	0.087	12.7	0.2	2	23	601	623	600	623	0.96
6	12	0.00041	0.029	14.2	0.3	3	23	647	668	646	668	0.96
7	12	0.03	2.1	8.3	8.4	2	23	733	755	732	755	0.95
8	12	0.072	5.2	7.1	4.2	3	23	770	791	768	791	0.92
9	12	6.6e-05	0.0048	16.7	0.2	2	23	845	867	845	867	0.96
10	12	0.33	24	5.0	0.5	1	23	946	968	946	968	0.97
11	12	0.00087	0.063	13.2	1.7	2	23	982	1004	981	1004	0.96
12	12	0.0047	0.34	10.9	0.8	1	23	1079	1102	1079	1102	0.98

Sequence Information

Coding Sequence: ATGTCATCGAGCGCAACGTCGTCGCACGAGCCGATgacggcgatgacgacgacaacgacgacaacaacCACGATGATAGCGGATGCAACGGAGCTGGACAGCGATGGTTCCAGTTGCGGGGAGCGCGACGTTTGGAAACGCGTCCGCGCCGATTCCGTCGACGTTGGCGCCGGGCCCAAGAAGCGCCGGAAGCAGACCACACCGGTGAGGTTCTCGTCCGATCTCGCGCACGAGGACGAGCACGAGGACGAGGTCAGCGAAGGTAAGACAGCGTCGTCGCGATCGCCGTTACCGAGCGTCGACGACCAACATCAGTATCATCACCAACACCAACCCTCACCGTCGTCGAAAGACGAGAATCTAAACAGCGAGTTCCGTTGCCAGCACTGCGGCCGGCTCTTCGACAGCGACGAGGTGCTCAACGTCCACGTGGACTGCGAGCACAGTGGCGCGAGCCGATCGACGCCGGGCGTCGCCGTCAAGGTAGAGCCGACGCAGCAGCTGGACCAGGCCAACGACGGTCCCGTGAGCCTCTTGAGCGTGAAGAACTTCGCGACCACGTGGTTAACCACGTCCGGCGGTCAGCAGCACGTGCAGTCGCAGACGCAGATGCAGCCGCAGATGCAACCCTCGCAGAGCGAGGACTCGTGGTCGGCCGCCGGTTCGGTCAGTCAAATCGTCACGATGACGAATCATCTGCAGCCGCTCCCGGGTTTCCCGAGTGCCCTCGCTCAGTACCTACCCCTACCGGGTTTCCCGCTGACAGATCCCCAACACGTCCCTAGATCCACCCTCGGTCCGATGCCGATCAAGATCTTCAACCCGGAGGCGTACTGTGACATGTGCAAGAAGGAGTTCTGCAACAAGTACTTTCTGAAGACGCACAAGGCGAACAAGCACGGTATCTACGTGGACTCGCCGACTCCGAGCGCGACGGCGACAGACGCAACTGGCGTATTCGGCGCGGGTGTGTTCGCCTCCGCGAACTATCACGCTGGTAACGCGAGCGTGAAGCTAGAACCGCCAGCGACACCGCCGCACCGGCATTTCCGCAATGAGGAAGCTTCCTCGAGGAAGCAGAAGACGCCCAATGAGTCGTCGATCGTGGAGTCGCAGTCATCGTCGGATGGCTGTCAATCTGCTATCAATCAGCTGTCGCAGAATGAGGAGGATCGCGAGACGTCACGCGACAGTTCCAATGGCATGGAGGCGCTTCTGAAACAGGAATACGGCGTCGAGCAAGAGGACGCCAGCTATATGCCGGCACCTAGACACCTATCTCCTCAATCCATCCAACAGGCGCGGGATTCCGGCTTCAGCGCCGATCTCCTGCGTCGTCTGGGCGTGATAAATCCCGAGGCGTTCTGCGAGATCTGTTGCAAGGAGTACTGCAACAAGTACTTTTTGCGCACACACAAGATGAAGCGACACGGTGTCATCGTGCAGGATAACGAGCGATCGCCCGGCAATCCCACCGGCACGACCACCTGGCACCAGGTGCAGACCAGTCCGTTGAACCTGATTGTCGCCGAGACTGCTACTACTGTCGCCGGCGCGGGTTCGGACACCAACGAGCGCACTGACGATTATGAGTGCAAACCATGTGATATCCGCTTCCAAACGGCTAGTCTGTATCGGACGCATTGTAGGAAGATGCACGAGGGCGAGGAGCACGTTTCACCAAAGCACGAATACGATCTAGACGGTGCCGATCAACGTACTGACACCATTTCAGAGGACCTGCAGAAACTGCAGACGATGATCATACAGTTGAACGGTTTGGATTCCAGCAAGGGATTGTCCTGCGCCGTGTGCGGCAAGGAATGTGACTCGAGACTAGCTCTGCGAGTTCACATGGCGACTGAGCACGGTGTTGCCGGCGACGAGGCTCAGCTGTCGCCACAGGATAAGTCACCCCCGACCGTATCCACAGTCTTCTGCACCCTTTGCGAGAAAGACTATCCTAGTCAGGAAGCACTGAGGAGACATATCAGCAAGGAACATCAGCATTCGATCGTCTCCAGTGCCGTTACTCTCTCGTCGCTACAATCGACTCCCGCGATTGCTTCTTCCGCAAATTCGACACTGACCAATCAGACTACGAGCAGCCAAGCCACGACAACGACATCAAtcacgacaacgacgacggcgacgacaacGGGCACGATGGACTCGAAAATGATACCCACGACGTGCTACTGCGAAATCTGCGAGAAGCATCTGTGCAATAAATACTTCCTGAAGACGCACATGCAACGGATGCACGGCATCGAGATAGAGAACGGCGCACAGATCGTCGGCGTGATCTGCAACATCTGCAACAAGGAGCTGTGCAGTAAGTACTTTCTGCGCGTTCACAAGCACAACACCCATGGGATCGTGGACGATACTACGTCGTCCTCTTCGTCGTCATCGGTGGCAGGAACGACGTTAGCCAAACAGGAGACCTATGATGCCAGCACCGGCGCGGACGATTCGGCGCTCAAGTCGAGTGAACAACTGGGTGATCTCAGTCACAGATACTTCACCGAGGTGTGTCCGATCTGCAGCCGCAGGTTCCGCAGCGTCAAATGGCTGAAAGCGCACCTGATGAGCGATCACGGCAAGACGGGTATCGACAAGTGGCGCGAACTCGAACAGCAGTATCAGGCGACACCGAAAATCAGCGGGAATAGTGGCAGGAGTGTCGCGAAGAACATTCAAACGCCGAGTCTAAAAATCCCGAACGGCTTTGAAGTAGCCCAGCAGATCAAACCGGCCGATTACGCGAATCTGGGGAATCAGGTGCTATCGAATCTCCTCGGCTCGTCGTCCGAGGAGCACCAGCTGAAGAACTACCGCTGCGGCTACTGCAATTTCAACACCCCCGTGCTGCCGTTCCTTTTCCTTCACGAGCGATCCCACGTGAGTCCTCAGGAGAGCCTCGAGTGCGATCGACCGCTGCAATGTCCGATCTGCTCACAAGACTTCCACCAACCGGAGCTGCTTCACCAGCACCTGCTCACCAAGCACCAGTTTCCCACTCTGCTGTCGCAATTCCAGAATCCTCTCCTGAACAATCTCAGACCGGACATCGACGTTAAACTGAACGATCACGCGAAGGATAGGGCCGACCTGGATGCGAGGAACGATCACGCGGAATGCAGTCCGCAGACCGCGGATCGCGGTGTCCCGGATGTCGCGAGGAACCAACGGCAGGACGACAATGCGGTGCAGGTGACACCTCAGGGCGCGTACAAGTGTGCGCAGTGCGGCTACGCGACGACGAACCTGAATCGCATCAAGAAACACGTACGAAAAGACCATAAGGCGATCGGCGATCCTACGGAGAGCGTGATTGCCGAGCTCAGCAAGACCCTGAGGGACGTGGCGAACAAGCAGAAGGTACCGGCTTGCTACGCGATGCCGCAGGATATGAATTCGAATCCGGATAAGACCATCATGCAGCCGTTCTTGATCGAGGAGCAGGACCTGATGCAGGCGGGTGCCGAGTCCAGTTCGGCGAAGAGATTCGCGCCTGCTCTAGTCTATCTACCGGTCAAGTCGAGAATTGCCAACGCCCTGACCGCTTCCTTCACCCTCACTCCTGCCTGA
Protein Sequence: MSSSATSSHEPMTAMTTTTTTTTTMIADATELDSDGSSCGERDVWKRVRADSVDVGAGPKKRRKQTTPVRFSSDLAHEDEHEDEVSEGKTASSRSPLPSVDDQHQYHHQHQPSPSSKDENLNSEFRCQHCGRLFDSDEVLNVHVDCEHSGASRSTPGVAVKVEPTQQLDQANDGPVSLLSVKNFATTWLTTSGGQQHVQSQTQMQPQMQPSQSEDSWSAAGSVSQIVTMTNHLQPLPGFPSALAQYLPLPGFPLTDPQHVPRSTLGPMPIKIFNPEAYCDMCKKEFCNKYFLKTHKANKHGIYVDSPTPSATATDATGVFGAGVFASANYHAGNASVKLEPPATPPHRHFRNEEASSRKQKTPNESSIVESQSSSDGCQSAINQLSQNEEDRETSRDSSNGMEALLKQEYGVEQEDASYMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGVIVQDNERSPGNPTGTTTWHQVQTSPLNLIVAETATTVAGAGSDTNERTDDYECKPCDIRFQTASLYRTHCRKMHEGEEHVSPKHEYDLDGADQRTDTISEDLQKLQTMIIQLNGLDSSKGLSCAVCGKECDSRLALRVHMATEHGVAGDEAQLSPQDKSPPTVSTVFCTLCEKDYPSQEALRRHISKEHQHSIVSSAVTLSSLQSTPAIASSANSTLTNQTTSSQATTTTSITTTTTATTTGTMDSKMIPTTCYCEICEKHLCNKYFLKTHMQRMHGIEIENGAQIVGVICNICNKELCSKYFLRVHKHNTHGIVDDTTSSSSSSSVAGTTLAKQETYDASTGADDSALKSSEQLGDLSHRYFTEVCPICSRRFRSVKWLKAHLMSDHGKTGIDKWRELEQQYQATPKISGNSGRSVAKNIQTPSLKIPNGFEVAQQIKPADYANLGNQVLSNLLGSSSEEHQLKNYRCGYCNFNTPVLPFLFLHERSHVSPQESLECDRPLQCPICSQDFHQPELLHQHLLTKHQFPTLLSQFQNPLLNNLRPDIDVKLNDHAKDRADLDARNDHAECSPQTADRGVPDVARNQRQDDNAVQVTPQGAYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSKTLRDVANKQKVPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQAGAESSSAKRFAPALVYLPVKSRIANALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -