Basic Information

Insect: Ooceraea biroi
Gene Symbol: RREB1
Assembly: GCA_003672135.1
Location: NC:7089669-7110839[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.6e-05 0.0019 17.9 1.3 1 23 41 63 41 63 0.97

2 14 0.00047 0.034 14.0 0.0 1 23 77 99 77 99 0.98

3 14 8.7e-05 0.0063 16.3 4.7 1 21 105 125 105 128 0.95

4 14 0.056 4.1 7.5 0.2 1 23 223 247 223 247 0.94

5 14 0.011 0.8 9.7 3.0 2 23 253 275 253 275 0.96

6 14 0.012 0.85 9.6 0.1 1 23 508 530 508 530 0.96

7 14 0.00014 0.01 15.6 0.3 1 23 539 561 539 561 0.98

8 14 0.0028 0.2 11.5 3.1 1 23 567 590 567 590 0.96

9 14 0.0025 0.18 11.7 2.1 3 23 968 989 966 989 0.96

10 14 0.0015 0.11 12.4 0.1 3 23 1257 1277 1255 1277 0.97

11 14 0.98 71 3.5 10.9 1 23 1283 1306 1283 1306 0.97

12 14 0.0039 0.28 11.1 2.3 1 23 1354 1378 1354 1378 0.97

13 14 0.0074 0.54 10.2 0.4 2 23 1532 1553 1531 1553 0.94

14 14 0.63 46 4.1 8.9 1 23 1559 1581 1559 1581 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.6e-05	0.0019	17.9	1.3	1	23	41	63	41	63	0.97
2	14	0.00047	0.034	14.0	0.0	1	23	77	99	77	99	0.98
3	14	8.7e-05	0.0063	16.3	4.7	1	21	105	125	105	128	0.95
4	14	0.056	4.1	7.5	0.2	1	23	223	247	223	247	0.94
5	14	0.011	0.8	9.7	3.0	2	23	253	275	253	275	0.96
6	14	0.012	0.85	9.6	0.1	1	23	508	530	508	530	0.96
7	14	0.00014	0.01	15.6	0.3	1	23	539	561	539	561	0.98
8	14	0.0028	0.2	11.5	3.1	1	23	567	590	567	590	0.96
9	14	0.0025	0.18	11.7	2.1	3	23	968	989	966	989	0.96
10	14	0.0015	0.11	12.4	0.1	3	23	1257	1277	1255	1277	0.97
11	14	0.98	71	3.5	10.9	1	23	1283	1306	1283	1306	0.97
12	14	0.0039	0.28	11.1	2.3	1	23	1354	1378	1354	1378	0.97
13	14	0.0074	0.54	10.2	0.4	2	23	1532	1553	1531	1553	0.94
14	14	0.63	46	4.1	8.9	1	23	1559	1581	1559	1581	0.99

Sequence Information

Coding Sequence: ATGGATTATTCGAAGAAAGTGGTTGAAACCGAAAATGGACCTGACCAAGAGCAAGAGAATGAAACACCGGTTGATGCTGCATCACCATCATCAAGTACTGAGCTGTCGGAGACTGGTGCGCATCCATGCCCGACGTGTCCGTCGGTGTTTTCCACCTCTCACGAACTGACGAATCATCTGCGCGGTCACAACTCGCCTCGTAGCACGGACTGCAGTGGCGAGGAAGACTACAGTTGTGGTGTTTGCAACAAGGTGCTCAGCTCGGCTAGCTCACTCGACGAGCACGTGTTAATGCATTCGGACGAGCGATCGTTCAAGTGCAAGCACTGTGACATGTCGTTCACGACAAACAGTAACATGAACCTACATGTGAGATGTGCTCATCGGGCGGTGTCGCCGAACAGCTGCACAGACTCCGAGGGCAGCAGTGGCTCAGAGAAACCAGCGACAACGAACCAAGATGAGTACAACAACAACGAACTTACTGAGCGCAACTCGCCAGATCTGATGGACGATCGGCAACAGGCGTCGCCCAGTAACCATACGATTAAACGGAAGAGATCGAAGGAGGATACGAGCGACGTGGAGGACCAAAGGCACCACAAGATCCTCATAAACAACGCCAGAATGATGATCAGATGCCGGCCGGAGGAGGAGCAGAAAGTCTTCAGTTGCTTGATCTGTGGCCGACAGGATTTCGTGACCAGCGCGCTCCTGAAGTCCCACGTGGAGCGGATGCATCCGGGTTCTCCAGCGAAATGCGATATCTGCAACCTGTCCTTCAAGAATCACCGCGTACTGAACCTCCATCGTTCCATGAGgcactataaaaaaaactcgGACGGCAACAACAGCCGGAACCTACGTAACTCCGTGGACGGCTTCAAAGATCTGACATTCATCGACTTCTCAGCCATCAAGTTTCCGACGATCGCCCGGGCGATGTGCGAGCGGGAGTTGCACCGGCCGGCTTCTGGCGAGGCGAACAGGTTCCAATGCATGAAGTGCCAGCACGCGTTTCCCTGCAGGGAAGCCCAGCTGGCTCACGAGAAAGAATGTAGGGGTCCCTACAAAAACAAGAGGAACAGCAACGACAACAACAATAATTACGACAACAGCACCAATAACAATCTCGAAACAGAGCTGGACGTCTCGCCGCCGCAGCTGGATGATCCTAAAACGAGGCGCGAGAAGTTCTTCGCTGTGCTAGATCTGCAAAATAAGTCCTCGGTGCAGGAATCGAAAGAGCTGAGAGACGCGAAAGAGGCCAAAGAGCTGAAGGAGATCAAGGAGCCTAAAGAGGCCAAGGACCTAGCCGACATCCCAAGCATCTTATCTGTCAGTCTAAACGGCCTGCAAACTTTTCCTCGCTCGGACACCAGCACGCCTGAGAACAACGTTAAATTTAATCCGAGTGTCAGTTCCTCAGGCTCATCGGGCACCTGCTCGTCCGAGTACAATGAAGAGGAAGCGCAAGATTCTTTCACCGCGGAATTTCGGAAGATGAAGTTGAAGGGTGAGTTCCCTTGCAAACTGTGCACGGCAGTATTTCCCAATCTGCGGGCACTGAAGGGCCACAATCGCGCGCACATGAACGTGGAACCGGGAACGCCGTATCCATGCAACATGTGTCCCTTCATTAGCAGCGACAAGGGGAGCTTGTCGAAGCATCTGAGATCGCACAATGGCGATCGGCCGTTCGAGTGCTCCCTCTGCAACTACGCGTTCACTACCAAGGCGAATTGTGAGAGGCACGTGAAGAACCGTCATGGAATGATAAGCAAGGAAGACGTCAAGAACGCGTTGATCTATCATCCAAGTGAGGACTCGACGAACGAAAACGTCGAGAGAAGTTCGCCGAGAGTCGTTCGGGAGGACGTGCGGAAAACGCTCATTTATCCGAATGAACGTGAGGAAGCCTCGCAGCAACAACAAATGCATTATCCGCCTGTGCCGCTGGACAGTAATCCTGGACCATCGAACGCTCGTGCCGATGTGTTGAACTGCTATGAGAAATCGGAAATGTTCTCCAGGCCGACGAAGATGCAAATGTTTAACGTCGTGAAGAAAAGTACCGAGGACTCGAACGTGTCTCACGATCTGGTCGCGAAGCCTAATTACTCAAAGATCGACGAGGACGTGGAATCAAGATCATCGGATGGGAGCGTGTCTCTAGTCAATGATACCAAAACGGATCCGCACCAAAGAATTCAAGCTAGTCCGATGAACTTGTCGAAACCCTCAACGAGCTCTGTGTCGAATTCCGGAGAGGACGGGCCGTTGGATCTTTCGATGGATCCTCTGGATCTGAGCAAGAAACGGAAGAGGGAGAGCGAAGATATCGGGTCTCAGGATGAGAAACGGTACAAGAACAACCAGCAAGAATTGTACGCCACGAATCAAGCGTTGCTTTTGACGCAAGCTTTGTTAAACAGAGCTCGCGAGAACTCTCCGACATCGTTGGATTCTTTTTACGCGAATACTATTTATCGCAATCTTGGCACACTAACGGCTGGTGCAGTGGGCGCAGGTATGATATCACCTTATTTCCTCAATCCTCACATGTTCAACCAGGAACTGGCCGCGAAAGGCAGACTGCAAAAGGAATTAGTTAGGGGTTTGCAATTGACCGGCGGCGGTGCTCTCTCGGTAGATCCGTCGTTGCCTAGCACCAGTTACGCAGCTTATACGCAGGCAAGAGACGTTGCTCCGCCAGCTACGAGCGAGCAAACCGCTTATGCGAATCTAATAAGCGCGCAAATGGCTAACCAGACCACGTCGAGCCGCGAGAAAACGGATAGTAACATCTCATCAAACGATTCTGTTAAAATGGTCATCAAGAACGGAGTGTTAATCCCCAAGCAGAAACAACGCAGATATCGAACTGAGAGACCCTTTGGCTGTGAACATTGCTCGGCGAGATTCACTCTAAGAAGCAACATGGAACGACATATTAAGCAGCAGCATCCTCAGTACTGGAGCCAAAGACCTCGCGGTGGACACTCCACCAGAGGCAGACCGCCCGCGAATCATCCAACTGTGGTACAGAATTCTGCTCCGTCGACTTCACAGGTGGCTCAGCCATACCCGAACATTCCCTCAAATATGGATTCGTCGATGATTTCGTCGGACTACAACAAGCATCCTATCTCGGACCAAGTGAAATACGCAATTCTTGCGCAGCAATTAAAAGCTAATAAAATAGAGGAGAATGATACGGACGACGAAATGGTTATAGATGAGGAGGAAGGCGTTGAGGAACCACAAACTCAGCACGAACCTAGTACGAGTTTACTGAGAGACCAATTAGAGAATAACGAGGACGTCAAAGATGTTGCCGTGAAGACGGAAGCGGTAGAGTCTACCGAAGAAACTTCGGAGGAGTCCCATAACGAACAGGCCGCGCACAATAGCGTCGATGAGACAGCGAAGCCGGAAGAATCCGCGGCAGATGAAAGCGAAGAAGTGATGCAACCTGAAGAAGCGGCCGTAAAGACAGAACCTGTCGAAAAAGAACAAGGTAAACTCGAGGACGGGACGCCCGATCTCGCGAGCGTCTCGAAACTCTTGGACAACGCCTCTCAGCAATACCAGCAATTTCAGCCGCAGTATTTGAGCGACGAGGAAGGTCCCGTGGCCTCGACCAGCGGCAACAATTCCGGTAGCGAGAAATCCGACTCCCTCACCTCGGGAAATGATTCCTCGTCGAgcaagaagaggaaaaagaagaagaagtccGCGTACTCGATGGCACCTAATCGAGTGATATGTCCCTTCTGCCAGCGTCCGTTCCCTTGGACCTCGTCATTGAGACGACACATCCTCACTCACACTGGCCAGAAGCCGTATCAATGTGCTCATTGCTCACACCATTTCACCACGAAGTCCAACTGTGATCGTCATCTTCTGAGGAAACATAAAACCAAGGCAAATAAGATGCGACGAAGAAACAACTCCTCCTCACCGGACGTCCAGCTAGCAGTGAACAACAACAGCGGCAACAACAGCAGCGGTAACAACAGCAATACGTTCTCCATGAGAAACGTACCTGAGAGACCGTACAAATGCAATCAGTGCCCGAGTTCGACGTTTTCCACGTTAGGCAATCTGAAGAAACATCGAACGACGAAGCATCGCAAGGCTAGTTGCAGATCGGAATCTAGCGATCAGCAAAACAGTCCACCGCAATGCTCCGCGCAGAACGATCAGAGCGATTACGAGAGCCGGTCGTCGAGCACGTCTGAGAACATGGAAAACTCGTGCACCAGTGGAACTACGAGGTCAAATCGTAACACGTCCCCTCCAGTGAACGAGATCAGCAAATCGCGTAGATCACCGAGATCATCGCCAGGTCCTGGCGACGTTCCCTTCAAATGTTACCTCTGTGAGAGCGGCTTTCAGGAGCGACAAGATTGTTTGGACcatatcaaaattaatcacGAGCGCTCATACGAGATGCTGATGGCTAAAGGCGCTCTCGAACATATGAGCATAGACGCGAACGAAGATCAGATATCAGCAGCGCAGCAGCATCCCAGCGAcggcgaagaaaaaaaaggaagaaacttTCCCGACTATAGCAACAGAAAAGTAGTGTGTGCTTTTTGTATGAGACGATTTTGGTCCGCGGAGGATCTTCGCCGTCACATGAGAACTCACACGGGCGAGAGGCCTTTTAAATGCGACATCTGCTGCAGGAAATTCACGCTGAAGCACAGCATGCTTCGCCACCGCAAAAAGCACGAATCAGTGGACTCTGCCATGTACATAGGAAACAGCGGCGACGAGGAGAACACGCCCGCGCAGCCGCCGACGATAACTCCCAGGAGTCAGCAGCATTCACCGATCCCGACGAACACCAGCAGACCCCGTACCCAGGATAGAATCTCTCTGCCGACAGTCGCAGCGGTCGCAACAGCGGACGCAGCACCCTGCGCACTGATGCGATATAATCACTATGATAATATGGCCACTCTTACTGGTAGAATGGCAAACGACGGCTCGCAGAGCGCTGCTCCGGCCTCCTTGCCTTTCCCAGCTCCTCCCGCGGAAGCGCCCAGCGAGAGCGGAGACAATGACCTGATCTCCAATTTACTAGGAATACGCGAAAAGGGTTTACTCGACAAGGTTCTTTTGAGCTCGGCGGACGACGCAGCGAAGTTATTGGGCGTAAAACACAGCGAGTAA
Protein Sequence: MDYSKKVVETENGPDQEQENETPVDAASPSSSTELSETGAHPCPTCPSVFSTSHELTNHLRGHNSPRSTDCSGEEDYSCGVCNKVLSSASSLDEHVLMHSDERSFKCKHCDMSFTTNSNMNLHVRCAHRAVSPNSCTDSEGSSGSEKPATTNQDEYNNNELTERNSPDLMDDRQQASPSNHTIKRKRSKEDTSDVEDQRHHKILINNARMMIRCRPEEEQKVFSCLICGRQDFVTSALLKSHVERMHPGSPAKCDICNLSFKNHRVLNLHRSMRHYKKNSDGNNSRNLRNSVDGFKDLTFIDFSAIKFPTIARAMCERELHRPASGEANRFQCMKCQHAFPCREAQLAHEKECRGPYKNKRNSNDNNNNYDNSTNNNLETELDVSPPQLDDPKTRREKFFAVLDLQNKSSVQESKELRDAKEAKELKEIKEPKEAKDLADIPSILSVSLNGLQTFPRSDTSTPENNVKFNPSVSSSGSSGTCSSEYNEEEAQDSFTAEFRKMKLKGEFPCKLCTAVFPNLRALKGHNRAHMNVEPGTPYPCNMCPFISSDKGSLSKHLRSHNGDRPFECSLCNYAFTTKANCERHVKNRHGMISKEDVKNALIYHPSEDSTNENVERSSPRVVREDVRKTLIYPNEREEASQQQQMHYPPVPLDSNPGPSNARADVLNCYEKSEMFSRPTKMQMFNVVKKSTEDSNVSHDLVAKPNYSKIDEDVESRSSDGSVSLVNDTKTDPHQRIQASPMNLSKPSTSSVSNSGEDGPLDLSMDPLDLSKKRKRESEDIGSQDEKRYKNNQQELYATNQALLLTQALLNRARENSPTSLDSFYANTIYRNLGTLTAGAVGAGMISPYFLNPHMFNQELAAKGRLQKELVRGLQLTGGGALSVDPSLPSTSYAAYTQARDVAPPATSEQTAYANLISAQMANQTTSSREKTDSNISSNDSVKMVIKNGVLIPKQKQRRYRTERPFGCEHCSARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPANHPTVVQNSAPSTSQVAQPYPNIPSNMDSSMISSDYNKHPISDQVKYAILAQQLKANKIEENDTDDEMVIDEEEGVEEPQTQHEPSTSLLRDQLENNEDVKDVAVKTEAVESTEETSEESHNEQAAHNSVDETAKPEESAADESEEVMQPEEAAVKTEPVEKEQGKLEDGTPDLASVSKLLDNASQQYQQFQPQYLSDEEGPVASTSGNNSGSEKSDSLTSGNDSSSSKKRKKKKKSAYSMAPNRVICPFCQRPFPWTSSLRRHILTHTGQKPYQCAHCSHHFTTKSNCDRHLLRKHKTKANKMRRRNNSSSPDVQLAVNNNSGNNSSGNNSNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRTTKHRKASCRSESSDQQNSPPQCSAQNDQSDYESRSSSTSENMENSCTSGTTRSNRNTSPPVNEISKSRRSPRSSPGPGDVPFKCYLCESGFQERQDCLDHIKINHERSYEMLMAKGALEHMSIDANEDQISAAQQHPSDGEEKKGRNFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFKCDICCRKFTLKHSMLRHRKKHESVDSAMYIGNSGDEENTPAQPPTITPRSQQHSPIPTNTSRPRTQDRISLPTVAAVATADAAPCALMRYNHYDNMATLTGRMANDGSQSAAPASLPFPAPPAEAPSESGDNDLISNLLGIREKGLLDKVLLSSADDAAKLLGVKHSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -