Obir002667.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:2402084-2406470[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.025 1.8 8.6 0.2 3 23 456 478 455 478 0.94 2 10 0.0015 0.1 12.5 1.4 1 23 484 508 484 508 0.98 3 10 0.00014 0.0098 15.7 0.2 1 23 514 538 514 538 0.97 4 10 0.00016 0.012 15.4 0.1 3 23 546 568 544 568 0.93 5 10 4.2e-05 0.003 17.3 1.7 1 23 575 599 575 599 0.97 6 10 0.00017 0.012 15.4 0.7 2 23 607 630 606 630 0.95 7 10 3e-05 0.0021 17.8 4.9 1 23 636 660 636 660 0.97 8 10 5.6e-06 0.0004 20.1 0.3 1 23 666 690 666 690 0.97 9 10 4.5e-05 0.0033 17.2 0.9 1 23 696 718 696 718 0.99 10 10 0.066 4.8 7.2 0.1 1 23 803 828 803 828 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCGGAGGAGCCGCCGTTGCCGCTTGCATGTCGAGACGACGCAGTCGCGAGAGAACTGGCTGCGAGGGCGAGGGAACGGAATGCGCGTCCCCCGACGCGCTTTTCGCCCCTTCGAAGGCCGAAGAGACCGACAAAAGGGACAGGAAGAGTAAGCGGTACGAGGCCTGGCATCAGACGGCAACCGGCAAGAGTGCCGACGTCGTCGAGACGGTAGCCGACTTTGAGAAGTGGTTGAAGATGCGCAACACGGAGCCGCCGGTGCCATCGAGCATGGACTTGGACACGACCAAAGTGGTGGAGGGCGTGGATCGGTATCTGGGCGAGGAGATGCTGTCGCATAACTGCTTCCTAGGCAAGGATCCATATGGCTTGTCCATCGACATCGATCTGGCCGATGCCAAGAAGTACAACCTGTCATCGAGCTACGATCCGATACTGCAGGACCTGACGCAGAGCGAGAACCGCTTGTTGGCGGAGGAGCCACCATGCGAGAAGGTCGTCGACGAGTACATGCTGTCGGAATTCCACTTGGATCATCTGGATCCACTGGCGGCATTATCGCCGGATGACATGATGGTGGCTGGTGAGATCCTACCATCCACGAGCAACCAGCCAACGCTGAAGGTGGAGAGCCACGGTATCGAGCAAAGTACTCCGGCAAGCACGGTAGTCCTAGAGCAAACCGACGAGATGCCTTGTGAGAAATCCACGCAAGTTATCCTCAACGAGTTGTCAGTGGGTTTAGGGAACATGAATGAGGTGGAAGGCGCGAAATCAGAGTCGGGAGTTGAAGCACAATCTTCGGAGAGCCCCGCAGAGCTCTTCATAGAGACTTTAACGCCGGTGGAGGAGAGCTCGTCGAGTTCCATAGTCGCTAATACGGATACGCATCCTCCAGGTACCATAATGGAGCAATTGAAGTCGAAGACTAGAATGAAGCTTGAGCCACGTATCATTAAGAAGCGTCGGCAGATGACGGAGCGACTGGAGAAGAAGCTTGACAAGCACATCAATGGTAAGGGCTTCGCTGAGACGGGCTCGCAGGATGGCGTGATGGCCGTGGTTGCCATATCGACCGACAAGATCTCCAACACGACGCAGATCGTCATCAACACCGGCACGGAGAAACAGATCTATCAAGGCAAGACCTCGGAGCTGATCGAGGCCACGGGCAACTTCCCAAAATTGCCCAAGATAGACACTTCTGCCGCAATCTGGAACGATACTGTGGAATACGGTATCGATAGTAATCCGAGTAGTCAATATGAAATCGTCATATCCAACGCCCTGGAGGAATTAGGCATCACCGATGACAGTCTACAGCCTACATGCATCACCGAGCACGACAAGGTGTGGCTCTGCCCACGGGATGGTTGCAACAGGCAGTTTGGCAGATTGTACACTTTAAAGGGTCATTTATTGGCTCATTACGGAGTTAGGCCATTCAAGTGCGACTTCGAGGGATGCACGTGGGCCTTTTACTCCGAGTTCAAGTTAAAACGCCACAAGGAAACGCATCTGAAGCGCAAGGACTACGTATGCGAGGTAGAGGGCTGCAATCGTCGATTCACCACCGTCTACAATCTCTGGAGCCATGCGAAGCTGCATAGCCGTCCAAACAGGATTGTTTGCCAGGTGCCGGATTGCGACGAGAAGTTTCAGACGAAGCGGGCATTGGAACTACACATGAAGTCGCACGATCAGCGTCACGCGCCTTACGTTTGTCAGCACGAGGGTTGCGGCAAACGGTATTACAGTAGCAACGCGTTAACGTCGCACCAGCGGTCGCACAGCTACAAAGAAGTGGACATCAAGTGCTCGTGGCCGGGTTGCGGCAAAGTATTCGACAAGCCGTGCCGACTGAAGGCTCACACGCGATCACACACCGGTTGCAAACCCTACCACTGCACCTTCCAGGACTGCAAATGGGCCTTCTCATCGTCGAGCAAGCTCAAGCGGCACCAAAAGAAGCACACGAACGAACGGAAGTTCGTGTGCGACGCGCCGGGTTGCGGCAAGGCGTTCATGCGATCGGAACATCTGAAGGAGCACCGATTGACGCACACGGAGGGTCGTTACTTCCAGTGCTTCGTGTGCGACGCTCGGTTCTCCGCTAAGAGCAGCCTGTACGTGCACATCAAGAAGCACCAACAGATCAAGACGGACAACGCGAGTTTAGCGGACGGCACGACTGCGGAATACAATCCCGGTGGCGCGAAACGCACGAAGACGAAGGAATCCCATGGTTCAAGAGTGAAGCCGATCGTCAAGTCCTCGAGGCGAAGGCCCACGGAGGCGACAAATGTCGAAATTGTGGAAAAGACGAGCGCCGAGAGTCCGTCGAGTCTGCACGCCGACCTCAACGCGCATTCTCAGAACCAGGATGACCTGAAGTGGCTGTACCGTTGCCCGGTGGAGCTCTGCGGACACTTCGCCGGCAACGAGGCGAATCTGCGCGAGCACGTGATCAAAACGCACGACGTACGGTGCGAGGATTCGCTGAGCAAGCCGTCCTCGGACACCGACATCGACTACATCCTGTACGCAGTGGACGATTCGAGCCTGAGCACACCCCCGGCCGCTCTATCGAACGAAGAGCAGATGATCATGGTGACGCCGTGCGACGCTGTCGTCCTCGGTACCTCGAGCACGGATCGTTGCCTACCGGAGCCGGAACCGCCACCTTTCAACGCTTTGCTGAAGAACACGGAGCCGCTCCGCACCGGCGTGCGAGTCGTCAAGCAGATTGACAAGGAGGTCGTCGCTACGAAGAAGGATCAAGGCTCGGCAAGGACGGACCTGACGTATTCGAGTTGGTCGAAACTGAAGAGGAACGGCGCGCTGATAGATTCGGTGGTGACCGGCACCTCGGACGTTGTATTAAACGCGAGTAACGACCTGAGCGAGGGCTTGCTGCTCACGGAGGAGTTACCGTCGATGTACTATCAAGACGACGCCGGGTATGGTACAGCGGGCACGGAATACCAGGTACTGTTACTAGATTCAAATCCACTCGAGAGTACCGGCAATCTGCGCTTGGTCTCGAGCGATTTCCGTGATGGACGCGAGTGTGGTGACTTTGATGATCGTCTCGAGTGA
- Protein Sequence
- MSCGGAAVAACMSRRRSRERTGCEGEGTECASPDALFAPSKAEETDKRDRKSKRYEAWHQTATGKSADVVETVADFEKWLKMRNTEPPVPSSMDLDTTKVVEGVDRYLGEEMLSHNCFLGKDPYGLSIDIDLADAKKYNLSSSYDPILQDLTQSENRLLAEEPPCEKVVDEYMLSEFHLDHLDPLAALSPDDMMVAGEILPSTSNQPTLKVESHGIEQSTPASTVVLEQTDEMPCEKSTQVILNELSVGLGNMNEVEGAKSESGVEAQSSESPAELFIETLTPVEESSSSSIVANTDTHPPGTIMEQLKSKTRMKLEPRIIKKRRQMTERLEKKLDKHINGKGFAETGSQDGVMAVVAISTDKISNTTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAIWNDTVEYGIDSNPSSQYEIVISNALEELGITDDSLQPTCITEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHSRPNRIVCQVPDCDEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDAPGCGKAFMRSEHLKEHRLTHTEGRYFQCFVCDARFSAKSSLYVHIKKHQQIKTDNASLADGTTAEYNPGGAKRTKTKESHGSRVKPIVKSSRRRPTEATNVEIVEKTSAESPSSLHADLNAHSQNQDDLKWLYRCPVELCGHFAGNEANLREHVIKTHDVRCEDSLSKPSSDTDIDYILYAVDDSSLSTPPAALSNEEQMIMVTPCDAVVLGTSSTDRCLPEPEPPPFNALLKNTEPLRTGVRVVKQIDKEVVATKKDQGSARTDLTYSSWSKLKRNGALIDSVVTGTSDVVLNASNDLSEGLLLTEELPSMYYQDDAGYGTAGTEYQVLLLDSNPLESTGNLRLVSSDFRDGRECGDFDDRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -