Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:12746424-12754895[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.6 1.1e+02 2.9 7.0 2 23 272 294 271 294 0.97

2 19 0.0027 0.19 11.6 2.3 1 23 344 366 344 366 0.98

3 19 0.71 52 4.0 1.7 1 23 415 437 415 437 0.97

4 19 0.039 2.8 7.9 0.4 1 20 487 506 487 508 0.93

5 19 5.5 4e+02 1.2 3.9 1 23 520 543 520 543 0.87

6 19 0.25 18 5.4 1.5 1 23 548 570 548 570 0.93

7 19 0.0024 0.17 11.8 0.6 1 23 615 637 615 637 0.97

8 19 0.002 0.15 12.0 0.1 1 23 643 665 643 665 0.94

9 19 4.6e-06 0.00033 20.3 1.0 1 23 710 733 710 733 0.97

10 19 0.18 13 5.9 4.8 1 23 739 762 739 762 0.90

11 19 3.8e-06 0.00027 20.6 1.0 2 23 770 792 769 792 0.97

12 19 0.0034 0.25 11.3 0.0 3 23 801 821 799 821 0.93

13 19 0.06 4.3 7.4 0.3 1 20 887 906 887 906 0.97

14 19 0.00038 0.027 14.3 0.1 2 23 926 947 925 947 0.96

15 19 2.2e-05 0.0016 18.2 1.1 1 23 960 982 960 982 0.97

16 19 0.00021 0.015 15.1 3.0 1 23 1004 1027 1004 1027 0.95

17 19 0.0015 0.11 12.4 0.8 2 23 1088 1110 1087 1110 0.95

18 19 0.00018 0.013 15.3 0.8 1 23 1132 1155 1132 1155 0.93

19 19 0.0097 0.7 9.9 0.5 2 23 1248 1270 1247 1270 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.6	1.1e+02	2.9	7.0	2	23	272	294	271	294	0.97
2	19	0.0027	0.19	11.6	2.3	1	23	344	366	344	366	0.98
3	19	0.71	52	4.0	1.7	1	23	415	437	415	437	0.97
4	19	0.039	2.8	7.9	0.4	1	20	487	506	487	508	0.93
5	19	5.5	4e+02	1.2	3.9	1	23	520	543	520	543	0.87
6	19	0.25	18	5.4	1.5	1	23	548	570	548	570	0.93
7	19	0.0024	0.17	11.8	0.6	1	23	615	637	615	637	0.97
8	19	0.002	0.15	12.0	0.1	1	23	643	665	643	665	0.94
9	19	4.6e-06	0.00033	20.3	1.0	1	23	710	733	710	733	0.97
10	19	0.18	13	5.9	4.8	1	23	739	762	739	762	0.90
11	19	3.8e-06	0.00027	20.6	1.0	2	23	770	792	769	792	0.97
12	19	0.0034	0.25	11.3	0.0	3	23	801	821	799	821	0.93
13	19	0.06	4.3	7.4	0.3	1	20	887	906	887	906	0.97
14	19	0.00038	0.027	14.3	0.1	2	23	926	947	925	947	0.96
15	19	2.2e-05	0.0016	18.2	1.1	1	23	960	982	960	982	0.97
16	19	0.00021	0.015	15.1	3.0	1	23	1004	1027	1004	1027	0.95
17	19	0.0015	0.11	12.4	0.8	2	23	1088	1110	1087	1110	0.95
18	19	0.00018	0.013	15.3	0.8	1	23	1132	1155	1132	1155	0.93
19	19	0.0097	0.7	9.9	0.5	2	23	1248	1270	1247	1270	0.93

Sequence Information

Coding Sequence: ATGGACGGGGACGTGGTGGAACTCGGGAACGTGGAGAGTGTGTGCCGACTGTGCCTCTCCACGGACGAAACGAGGTCCTCGGTGTTCGCGGCGCGAGACCAGGAAGACTCGTCCGGCGTCCCACTGGCCACCAAGATCGAAGCTTGCTTGTCGATCCAAATTTCAAGCACCGATAAAGTATCCACGCTGATATGCGCAAATTGCGTGAAAAGTGTAAACCAGTGGCACACCTACAAAGAGTCTTGTTTACGTTCTCAGGACAAGTTACAGGAATGGTTGGCAAGTCACTCGCAATCAAATCCTAAGGTTGTAACGATCAAGGATGAACCGATGGACGTAGACTCTAAAGACGATGCAGAAGTTGTCTCAGAGGACACCAGCGACTTGGAAGAAACACGTCCAATGGATGATCAGGCAATGGAGGACACTGAATCTGTCAGCGAAGAGGTACAAGAAGTAGCAAATAAAAGCAATGCGAATGAAAATGTGCCGAAAGATGCCGATACCACTCCATCCGTAGtgcagaatgaaaaagagaCTGACAGAGGGGAAGACCAGGTAGACCAACAGGATTCTGAGACTCTTCGCACGATTAAGAGCGAGCCGCAAGACGATGACGACACGGACTGCACTGTAGAACTGGAATCCACGAATAGCAGTGAGTTGCTACTGAATCCAATGGCGGTTGGCACGGAGGACACTGTCATGGAGGCGGACTCCACGCAAAAGTCGAACGCGGCCGGTGCATTACCTAAAAAGAAACTGAAGCGTGGTCCTCACACTCACTTCAGAGGAACGCGCGTCTTTAAGAAGAAGTGCGTACATTGTCAGATATTCTTGCACTCGAAGTATACGTACTTGAAGCACATGAAGAGGTTTCATAACAAGGAAAACGGCGAGAATTCGGAATCGATATCTCAaaacgacgaggaggagatGATCGAGGATATCGAGGATGAATTGATCAGCATGGAGAAGGAGTCGCCGCTGACGCAGGTTCAGCAGGACATCATTAGCCAATTGAAGACGTTCTCATGTTACACTTGCGATCAGACGTTCAACGATCGGCGCAGCACGCTCTCTCACATACGACAACACTTGCCGGATCTCAGGCCGTACACGTGTATCGCCTGCCTGACAGAGTTTCCTGACCGATCTATGTATCAATTGCATTGTGGCGCGTCTTTTGAATGCGCGATGAAGATTGCCCTAGTCGTGCCTAAACGCGGTAGTGAACGATACTTTACGTGTAACATGTGCCTGCGCTCGTTGCACGGCAGGAAGGAACTGCTCGGTCACTTATCGAAGCATTCTGATAAGCAGTACGAGGAGATGATGTCACCAGCGCGTTCGCCGCCCAAGCTGAAGCCGATGACGCCGTTGCCATCCGAGGGAAACTCGGCCAATGCGCAGCAAGTTGTCAACGGGCCTTACAAAAATGGCGATCCGGCGCACAACCACGCCTGCGATCTCTGCGGCATGATCTATCGATATCGACCAAATATGTTCAAACACAGAGAGTTCTGCCGGCAATTGCCGCCAGAAGCTCGAATGTCGTACAGGTGTGCTCACTGTCAAATGACGTTCCTCGTGTTCAAGAAATTCCACAGTCACATCACGGTGGCTCACAAGAAGAAGGAATTTCTTTGCTACCAGTGCGGCGCAAAGTTCTTGTCGCCCAGTGATTACCTGACCCATCACGAAAAACATCGCGCGTCGGCGCAGGGCGGTGGACAGGTGCAGCGCGACGGCACGTCGTCGCAGAACGCGGTTCAGGCATTGCTGAAGGAACGGAATGCCCACGAAGCGGGCCTCGTCAAGTCGAGGATCGGTACTCCGAAGTTCAGCTGCGCCCTCTGCAGCCAAGAGTTCTCGACGAGGCTCGAACTGACCGAGCACCGGAATCTTCATGTCAAagtgaaaatatattcttgcATCATTTGCCGCAGCATGTTCAGTAGTCCAAGCGCATTGGAGATTCACATGAAGGATCACGGCATCGAGGACCCGAATGAACGGAACGCCAACATCTCGTGCATCGAGTACGGCAGTTTGGACGAGGGCGCGAGGATCGAGGATTTGGATCTGATAAACGCAAGTGCCACCTCGGATCCCGGTTCCGAAATCCACGAGTGCAACGAATGCGGTAGAGTGCTCTCGAATTACGCGAATCTTCGCCGTCATACAAAGATGGTGCATCGCAATGCCACGATTTACGATTGCAACATGTGCTCACGTATGTTCACGTGTAAAGAATTGTACGATCATCACATGCAGATTCAGCATCTCTGCTCCAAGACGATGTTGCAGTGTCCTCAGTGTCCTAAGAGCTTTGTCTTCCAATCGAATTTCAACTATCACTTCCGCACCGCTCaccttgagaaatcgactGGTTACGGCTGTGATATTTGCGGCAAAGTGTTTGTCGAAGGTGCGTCATTGAAAATACATAGGGGTTGGCACAATCGTGCAAATTCTCGTCTAAGCACTCGATTCGTACTGGGCGATCAAAAGTTACTCAATTCTGATGCCTCAAAGGATGCATCAATTGATGCCGAGTTGGCCACAAACTCGGAACGGCCAGCGAGGGCACGAAAATCATTCCCCAATCCCCCACCTCAGTTGTCTGGTATCGGCACGAAGTCATCATCTGGGAACTTCCAATGTCAAGTGTgcaatgataaatttaatgatgtGACCGAACTCAGGAGTCACTTATGGGACGTCCATTGCGCACGCAACAAACCGGAGAAGAGTTTCTCCAACAACGAACTCCAGTGTGAACTCTGCACGAACGTCTTCCCCGATCAGGAAACCTTGGCGACTCACATGCAATGGCACAGAGCCAACCCCATTCTCAGCGATATACGAAAAACGTACTCTTGCGACGTATGTGGCAAGTCATACAGTTCAAGAAAGGTCTTGTGGAAGCACAAGAAGCTTCACAAAGCTACTGTTGTGGCCTCGCTCAAGTTCCAATCCTTGGCAAGGAAACCGATGGCTACTCAGTTCATGTGCACATTTTGCCGCAAGATCTTTTCGAGTAGCCAGTCCTTGCAACGCCACAAGATTAGCTTCCACAGTGAAGCGCAAAATCAGCAGCGCGCGCAATCACAGCCGAATAGCACTCGAAGATTTTCGGAGAGTCACGAGGACGAGCCGAGGCTGAAGCGTATGAAAGTTGAGATTGACGATGATTCCCCACCGCCCAAATTGCCGCCTTTTGCTATGGATTTTGCCGGTGAGAAGAGGAAGCCAGTCATGTGTCACGTGTGCCAGAAGATGTTCCCCAACATGAGTGTGCTGTACAAGCATAAGCAAATCGCGCACGAAAACCgaacaaagaaagagagaatgccCGAGTGCGTACCGATGACAACTCGGGACGGCAAATATTCGTGCAACGTCTGCTTCAAGGTGTTCCCTGGCTTGTCAAATCTGCGACAGCACTTCACTATTAAGCATAAGAAAACTTTCCATCACAGAACCGCACCGAACAGGGACAGACCCGTGCCGCTGCCGTTGCCGATCACCGAATCTCCGAAGGAGATTCGCGAGACGACCTATACCAATAACGTGATGTACAGCTGCAAGCTATGCAAGCAATGCCACGTTTTCAACAAGCAGTCTATTATCAGTCACGTCACCAACGTGCACAATGCGGTGTACCAAACCGACAGCAACGCGTTCCACAGAGAAGTTAATCTTGGCGCTTACATGGTGCACGGTGCGGTCGGGACTACTTGTCCACGATGCAACGTCAAATATCCCAACAATAGGGCTCTGAAGATACACTATGTCAAGTTCCATGACAGTCCTGACCATCAATGA
Protein Sequence: MDGDVVELGNVESVCRLCLSTDETRSSVFAARDQEDSSGVPLATKIEACLSIQISSTDKVSTLICANCVKSVNQWHTYKESCLRSQDKLQEWLASHSQSNPKVVTIKDEPMDVDSKDDAEVVSEDTSDLEETRPMDDQAMEDTESVSEEVQEVANKSNANENVPKDADTTPSVVQNEKETDRGEDQVDQQDSETLRTIKSEPQDDDDTDCTVELESTNSSELLLNPMAVGTEDTVMEADSTQKSNAAGALPKKKLKRGPHTHFRGTRVFKKKCVHCQIFLHSKYTYLKHMKRFHNKENGENSESISQNDEEEMIEDIEDELISMEKESPLTQVQQDIISQLKTFSCYTCDQTFNDRRSTLSHIRQHLPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKRGSERYFTCNMCLRSLHGRKELLGHLSKHSDKQYEEMMSPARSPPKLKPMTPLPSEGNSANAQQVVNGPYKNGDPAHNHACDLCGMIYRYRPNMFKHREFCRQLPPEARMSYRCAHCQMTFLVFKKFHSHITVAHKKKEFLCYQCGAKFLSPSDYLTHHEKHRASAQGGGQVQRDGTSSQNAVQALLKERNAHEAGLVKSRIGTPKFSCALCSQEFSTRLELTEHRNLHVKVKIYSCIICRSMFSSPSALEIHMKDHGIEDPNERNANISCIEYGSLDEGARIEDLDLINASATSDPGSEIHECNECGRVLSNYANLRRHTKMVHRNATIYDCNMCSRMFTCKELYDHHMQIQHLCSKTMLQCPQCPKSFVFQSNFNYHFRTAHLEKSTGYGCDICGKVFVEGASLKIHRGWHNRANSRLSTRFVLGDQKLLNSDASKDASIDAELATNSERPARARKSFPNPPPQLSGIGTKSSSGNFQCQVCNDKFNDVTELRSHLWDVHCARNKPEKSFSNNELQCELCTNVFPDQETLATHMQWHRANPILSDIRKTYSCDVCGKSYSSRKVLWKHKKLHKATVVASLKFQSLARKPMATQFMCTFCRKIFSSSQSLQRHKISFHSEAQNQQRAQSQPNSTRRFSESHEDEPRLKRMKVEIDDDSPPPKLPPFAMDFAGEKRKPVMCHVCQKMFPNMSVLYKHKQIAHENRTKKERMPECVPMTTRDGKYSCNVCFKVFPGLSNLRQHFTIKHKKTFHHRTAPNRDRPVPLPLPITESPKEIRETTYTNNVMYSCKLCKQCHVFNKQSIISHVTNVHNAVYQTDSNAFHREVNLGAYMVHGAVGTTCPRCNVKYPNNRALKIHYVKFHDSPDHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -