Obir008594.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:7484207-7506524[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.91 66 3.6 0.3 1 21 46 66 46 67 0.88 2 14 0.00093 0.067 13.1 1.2 1 23 75 98 75 98 0.94 3 14 0.017 1.3 9.1 0.5 1 21 122 142 122 143 0.94 4 14 0.00041 0.03 14.2 0.8 1 21 166 186 166 187 0.97 5 14 0.00045 0.033 14.1 0.9 1 21 247 267 247 268 0.96 6 14 3.2 2.3e+02 1.9 0.0 2 9 277 284 277 289 0.83 7 14 0.0036 0.26 11.2 1.2 1 20 329 348 329 350 0.95 8 14 0.00087 0.063 13.1 1.0 1 21 393 413 393 418 0.94 9 14 1.2e-06 8.8e-05 22.1 0.2 2 21 472 491 471 492 0.92 10 14 0.026 1.9 8.5 3.8 3 22 503 522 501 522 0.91 11 14 2.3e-06 0.00017 21.2 0.6 1 21 600 620 600 621 0.95 12 14 6.7e-07 4.8e-05 22.9 1.4 1 21 644 664 644 665 0.96 13 14 7.5e-05 0.0054 16.5 0.3 1 22 739 760 739 760 0.96 14 14 0.00011 0.0081 16.0 5.4 1 23 769 791 769 792 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAAGTAGCGCCACAGTCCGCGAATCAAAAATTTCGGAGAGAGGTGAATCTCGTGAGTGCACCGGAAGTACGTGTCGCCATAGgtCTACCGCAGCACATCATGTCGGACTATTACAAGAGATTGGGCAGACATTTTTGCTCAGCTTGTGGGAAGGAATACAGATGGATGCAGTCGTTGATCAGGCACGAACGCGAGGAGTGTGGAAAGGATCCACAGCACAGTTGTCCTGTATGCGGTGTAAAAATTCGACACAAATGGATGCTTAAGAAGCATCTGATCAATGTTCATCGTTGGGCTATCCCAAATGGTCACGGCAAGTTGCAGAAACAAGATTACTACAAACGATATCGTGGCAAGTATACTTGTGACACATGCGGTAAAGAATATATGTGGAAACAGTCCCTAAGTAGGCACAAACGCGAGGATTGCGtTCCAAGACTGATTGTGAAGAATATAGAAAAGCTGAGATATGCGAAGAAGCCGGTCATCTATAAATGCACAAGATGTGGCAAAGGCTATCAACTAGAAACGTCCTTACGAAGGCATCAGAGACTGGAGTGCGGTGTTGAGCCTAAGCATGAGTGCCAGATATGTGGTCTATTGGCATCTATGCTGCTATCTCAACAGGGCAATAACGAGTTATCCTGGGATCAACAGCGTTTCGTTGAATCTACAAATTCAACGATCTACAAATCGAAGGGTAACCGAAAGAAGAACTCAAGCGATGTCAAGTATGAGTGCAACAGGTGTGGAAAAACGTATAAAGCTACAACATCCTTGAGCCGACACAAACGACTCGAGTGTGGTGTCATGCCATGCGAGGTGTGCCCTATATGTGGCCGAATCATCATCAGCAAAATATGGAGTCTGTCTCATAATCTCAAGGATACGTCGACAGATGAGTctttaaaaacagaaaataaggAAGATTCCACCATATTATTGACGAACAAGGATGATCCGTTGAAACTGCAACTGTACATATGCAACTTATGCAACAAAAAATATAGGTGGTCGTCCAGTTTACATCGTCATCAAGTGCAGTGCGACGGTGCTCTCATGGACGACCTTAGCGGATTGGAATTAAATGCCAATGATCTAGATGTGAACAATGTTCGTCGATATTTCGCGAGTCGCGCTGGTCAAGCAGTGCTACAACAAGAACAGCGTTTTATGTGTGGCGAGTGCGGCAAAGGATACAAATGGATGGATAATCTGCGACGACATCAAAGATTGGAGTGTGaTCACGCtggactgtgtgattggttaaCCGAACCGTTTATAAAAGAGGAATTTGACAAGGACATTTCGCAAAGTTGCTTCGAATTTGTGACCACCGATTATAATGAGCTATCTCAGGAAACCTTAGAACACCGTACGAAGAAACAGATGAAGACTACCACGCTCGTCTGCGAGGAATGCGGAAAAAGTTTCTCAAGACTCGATAGTCTCAGAAGACACGAGAAGCTATACTGCAGAGTGAAAACCACGCGGAAATGTTGCCGTTATTGCGGCGAGAAATTCGAGAAGCAACTGTACCTACACAATCATATAAAGCGTAACACTTGGTTCTTCAAAGAATCTTTAATTCCCTTGCGATCTCCCGTCTTACCAAAACAGCAATCAGAAGATGTGAATGGACAATGCGCTGCAGAGAAAAGCAATGACGAGGAACCGGAAGTCTGCGAGGTACCGTTTCATGGCCAACTGAACTACCTGCTTTGCGACTCGCCAATTCTGAACAGCGTGGAGACCAATATGGTTCAGAAAAGCGCCAAGTCGTGCCAGCAGTTTCGCTGCGATGGTTGCGGTAGAACATATACGAGAGTCGACAGCTTGAAGCGTCATCAACAAAAATGCGACGAATTTCTAGCATCGTTCCAGGATCGACAAGAACAGTTAGAAAGACTTCAGCAGCAAGAATATTACTGTAACCAGTGCGGCAAAACGTACAGAAGACTGGATACATTGCGCCGACATCAGCGATTAGTGTGCGGTGATAAAGAGAAAGCAGACCAGCCGCAGAAATACGATGCCCTATGGATGCTAGAAAGAAAGGCTCTTAGCATCGGCCAGGAAAGCAAGGAATCTGTTCCGTTTTCGAACAAGTCATATTCGCCATCGAAGGCGCACGATACTTCAGTATCCAGCGACTATTCCATCGCACAAGTATACGGCGATTCTTACATCCCGATGATGCAGGCCCACTACATTTGCAGTGATTGCGGCAAGAAATACAAATGGCTAGATAGTCTGAAGAGGCATCAAAGAGTGGACTGCGGCAATAAGGAGAAAAAGTTCTCCTGTCATGTGTGCGAGCGAAAGTTTAAATATCGATACGAATTACGTAACCACATCACCGCACATCACGACGGGTGA
- Protein Sequence
- MAEVAPQSANQKFRREVNLVSAPEVRVAIGLPQHIMSDYYKRLGRHFCSACGKEYRWMQSLIRHEREECGKDPQHSCPVCGVKIRHKWMLKKHLINVHRWAIPNGHGKLQKQDYYKRYRGKYTCDTCGKEYMWKQSLSRHKREDCVPRLIVKNIEKLRYAKKPVIYKCTRCGKGYQLETSLRRHQRLECGVEPKHECQICGLLASMLLSQQGNNELSWDQQRFVESTNSTIYKSKGNRKKNSSDVKYECNRCGKTYKATTSLSRHKRLECGVMPCEVCPICGRIIISKIWSLSHNLKDTSTDESLKTENKEDSTILLTNKDDPLKLQLYICNLCNKKYRWSSSLHRHQVQCDGALMDDLSGLELNANDLDVNNVRRYFASRAGQAVLQQEQRFMCGECGKGYKWMDNLRRHQRLECDHAGLCDWLTEPFIKEEFDKDISQSCFEFVTTDYNELSQETLEHRTKKQMKTTTLVCEECGKSFSRLDSLRRHEKLYCRVKTTRKCCRYCGEKFEKQLYLHNHIKRNTWFFKESLIPLRSPVLPKQQSEDVNGQCAAEKSNDEEPEVCEVPFHGQLNYLLCDSPILNSVETNMVQKSAKSCQQFRCDGCGRTYTRVDSLKRHQQKCDEFLASFQDRQEQLERLQQQEYYCNQCGKTYRRLDTLRRHQRLVCGDKEKADQPQKYDALWMLERKALSIGQESKESVPFSNKSYSPSKAHDTSVSSDYSIAQVYGDSYIPMMQAHYICSDCGKKYKWLDSLKRHQRVDCGNKEKKFSCHVCERKFKYRYELRNHITAHHDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -