Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:12104816-12108596[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.0089 15.8 4.1 1 23 232 254 232 254 0.98

2 11 0.16 11 6.1 12.8 1 23 260 282 260 282 0.96

3 11 4.1e-05 0.0029 17.3 6.6 1 23 288 310 288 310 0.99

4 11 0.00028 0.02 14.7 1.6 1 23 316 338 316 338 0.95

5 11 8.7e-07 6.3e-05 22.6 1.9 1 23 344 366 344 366 0.97

6 11 1.8e-05 0.0013 18.4 1.1 1 23 372 394 372 394 0.97

7 11 7.2e-05 0.0052 16.6 0.6 2 23 400 421 399 421 0.97

8 11 1.6e-05 0.0012 18.6 0.0 1 23 427 449 427 449 0.96

9 11 2.8e-05 0.002 17.8 0.3 2 23 461 482 460 482 0.96

10 11 1.1e-06 7.8e-05 22.3 2.0 1 23 548 570 548 570 0.97

11 11 7.3e-06 0.00053 19.7 4.4 1 23 580 602 580 602 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.0089	15.8	4.1	1	23	232	254	232	254	0.98
2	11	0.16	11	6.1	12.8	1	23	260	282	260	282	0.96
3	11	4.1e-05	0.0029	17.3	6.6	1	23	288	310	288	310	0.99
4	11	0.00028	0.02	14.7	1.6	1	23	316	338	316	338	0.95
5	11	8.7e-07	6.3e-05	22.6	1.9	1	23	344	366	344	366	0.97
6	11	1.8e-05	0.0013	18.4	1.1	1	23	372	394	372	394	0.97
7	11	7.2e-05	0.0052	16.6	0.6	2	23	400	421	399	421	0.97
8	11	1.6e-05	0.0012	18.6	0.0	1	23	427	449	427	449	0.96
9	11	2.8e-05	0.002	17.8	0.3	2	23	461	482	460	482	0.96
10	11	1.1e-06	7.8e-05	22.3	2.0	1	23	548	570	548	570	0.97
11	11	7.3e-06	0.00053	19.7	4.4	1	23	580	602	580	602	0.97

Sequence Information

Coding Sequence: ATGTGTACCGCGCCTGGCAATGCCGGTACATTTGGGTATCCTTGGCCCTTTCCTGGGTCAGGGACAGAGACCCGGGAGAATACCCAGAACGACCTCGCGACCAACATCAGTTACGCAGTCAACAATAACCAAGATCAGGGTTCGAGCCAAAAGATACAGGTGGACATCAAGCCAACCAAGGTTGCCACCACTGCTCATCGTCGCCCAATGTTCACAATGAACGAGAGTTGTCAACAGATACCCACCACGCATCACGGCCACACCGGTGGAGCGCATAATCAAACTACCCATGGCACTCACGTCCGCACCAAAAAGCATCACGATGTATTCTCCTTGACCTGTGACAAGGGGGGTTGTAATTGCGACGCGTCGCATCCGACACCGCCGCCTTCTCTGTTTCCAAACGCCTTAGTCTTTACAACAACCGACAAGCATACCATGAGTAAGCACTTCATGACACCCATCGGACCACTGCAGCTCACGGCAGAAGAGTGCAACGAGATACTGATGAAGAGAGCGGCCGCCGCCTCTAATCAATCCACCGCCGCAAACAACGTGGCGACCAGCCAGACGGACAGTACCACCGCTCATTTCGGACACGTTCTCACCCATGTGAACACCACGCAAATCGAGACCAAGGTGAAACAACAACAGGACATGGGAAGCCAGGCCCGCGCTCCAAAGGAACGACCTTACACTTGTTCCGAGTGCGGCAAGTCTTTCCTCTTGAAACATCATCTTACGACGCACGCGAGAGTCCACACCGGGGAACGGCCGCACGTCTGCGTTCATTGCAGCAAGACTTTCGCGCACAAACACTGTCTTCACACGCATTTGCTGTTACACAGCGCCGAGAGACCGTACCAATGTCGCGAATGTAAAAAATCTTTCACCCTGAAGCATCATCTTGTGACGCATACTCGCGTACACACGCGAGAACGACCGTTTGTCTGTCAAGAATGCGGTAGGGCATTCCCTCTGAAACGTCATTTAGTGACCCACAGCAAGTTCCATTCCGGGGAAAGACCTTTCGTTTGCGAAGAGTGTGGCGAGTCATTTTCGCAGAAGGATCACCTCACTATGCATTCGCGCTTCCACGGCAGTCTACATCCGTTTGTTTGTCACGATTGCGGTGCAACCTTTCAAAGGAAATTTGAATTGGTTAATCATGGCCGACTACACGGTAGAATCCCGCAATCGTGTACCGTTTGTGGGAAAGAGTTTCTGCAGAAGAGAACACTTTTAGCTCACATGCGCCTACACACGGGCGAAACGCCGTTTGCTTGTACCGTTTGCGGGGAAGCATTTCCACGGAAAGCAGACTTGGTCGCTCACTCCAAGATTCACAATAATAACGCAAACACCGACGAAAAATCTCTTACGTGCAGGGAATGCGGATTGGAATTTACGAATCGAGAGGGTTTAACTTTGCATCTGAGGTTACATTCTGGTGATCGGACCCTTGTAACGGACCTTTGTGGGCTAGCCGCCGCCTTCCAACAAACCCCGGGACATTTCCTTACTCCAAACACTCCAGGAACTCATcagATGAACGGGCCAATAGGAACACCTGGCGTCAGTCATATGCACGGTGCAACGCAAACGTCGCCACCGGTGGGTGCCGGGCCAAAACCTAAACCGCACATTTGTCCTGATTGTGGTCGCGGCTTTGCACAAAAACACGGTTTGTCGCAACATCAACGACGTCACACGGATGGCAGTTGCCACATAAGATCCCACGTATGCGACAAGTGTGGCAAAGCTTTCTACCAGAAGAATCATTTGTTATTACATCAGCGTCAGCATATGGATCCGCCACCTAGCATACTTAGACAACAACAGAGACAGGCTGCTCAAGCTGCTGcccaacaacagcagcagcagcagcagcaagcgCAACAACAGgtacagcagcagcagcagcagcagcaacaacaacaggtgcagcagcaacaaatgcagcagcagcagtcgcaacaacagcagcagcagcagcaaacGTGTACCGTCGACACAAAGACAATTCAGTTACAGGCGATACAGCAACAAGTGCAACAACAGGTGCAACAACAGgtacagcagcagcaacagcagcagcagcagcaacaacagcagcaaacGCAGCAACAGCAAGCATGTTCCGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTAPGNAGTFGYPWPFPGSGTETRENTQNDLATNISYAVNNNQDQGSSQKIQVDIKPTKVATTAHRRPMFTMNESCQQIPTTHHGHTGGAHNQTTHGTHVRTKKHHDVFSLTCDKGGCNCDASHPTPPPSLFPNALVFTTTDKHTMSKHFMTPIGPLQLTAEECNEILMKRAAAASNQSTAANNVATSQTDSTTAHFGHVLTHVNTTQIETKVKQQQDMGSQARAPKERPYTCSECGKSFLLKHHLTTHARVHTGERPHVCVHCSKTFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRIPQSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVAHSKIHNNNANTDEKSLTCRECGLEFTNREGLTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTPGTHQMNGPIGTPGVSHMHGATQTSPPVGAGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFYQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQQQQQQQQAQQQVQQQQQQQQQQQVQQQQMQQQQSQQQQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQTQQQQACSVDAKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899020;
90% Identity: iTF_00684308;
80% Identity: -