Obir007147.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:1519919-1523920[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5e-05 0.0047 16.7 2.9 1 23 109 131 109 131 0.99 2 12 0.006 0.43 10.5 2.7 1 23 136 158 136 158 0.97 3 12 6.9e-05 0.005 16.6 1.0 2 23 168 189 167 189 0.96 4 12 4.2e-05 0.003 17.3 4.2 1 23 282 304 282 304 0.98 5 12 0.0011 0.077 12.9 1.1 1 21 309 329 309 333 0.90 6 12 6.6e-06 0.00047 19.8 0.6 1 23 372 395 372 395 0.93 7 12 9.4e-07 6.8e-05 22.5 1.0 1 23 421 443 421 443 0.99 8 12 9.1e-05 0.0066 16.2 4.0 1 23 457 479 457 479 0.96 9 12 8.6e-05 0.0062 16.3 4.7 1 23 485 507 485 507 0.98 10 12 0.00013 0.0097 15.7 1.4 1 23 513 535 513 535 0.98 11 12 2.6e-05 0.0019 17.9 6.5 1 23 541 563 541 563 0.98 12 12 0.00012 0.0087 15.8 0.3 1 21 569 589 569 590 0.93
Sequence Information
- Coding Sequence
- ATGAGACGTGAGCAAGTTTTAAATGTCCCGAGCGAAATCAATCATGTAGAGGATATCCCAATAGATGATGAACTGGATATGGACTGTGTTAGTAAGTCTAAGCAAGTAGGATACGAGAAAGCAACTAAAAAGGAAGCTTGCCGGACGAGAAGATTTACTATGTTCAAAAGAGTCACATCTATGGAgaacttgaaaaattataaggAGAGGCAGCGAAGGTATATCAAAAAGAGCGTCAAACGCGACGCCAGCGATAGCGAGTGCCACACAAGAACGAGGAATGCCCACAGTAGAACGGATGAAACGTCCGAGTACGAATTACAGTATAAATGTTCGAAATGTGATAGATTATATTCCAGTAAGAAGTCTTTAGATAGACACACGCTGACTCATAATGAGAAAAAGTTCAAATGCGATGACTGTGATAAGGAATTTTTCTGCCTGGATAAACTACTCAAGCACGTTAATTTGCACAAAACGAAGGAGAAGCCAAAGCCGGTGTCGTGCAGGATATGCAACAAGAGCTTCAGGAAGACCGACACCATGGTCAGACACCTGAACGTACACAAAAAGGTGAATCCCAAGGAAGTTTTCTGTATACTGAAAGAGATACGGGACAAGAGAAAATCCGAGAATATTCTGGAATCTTCTGACGAATCTCACAATATGTTGTTAACCGGCAAGGACGAGGAAACGACGAATGACGAGAAGTCACAAAGTGAGAACGACGGCACGACGAGGGAACTGAGGAAACGTAGCGTAAGAGCGGAGCAGAGGAGCTCGGATCTGTTGAACAGCGATTCCAGCGACGACAGATTCGAGCCCTCGTGCGACGCGTCGTTCTATCACTGCGAGCACTGCAGCAAGCGTTATTCCACCGAGAGAGCTCTCCAACGTCATCTGTTGGTACACGATGAGAAGAAATACGTCTGCAACGTTTGCAACATGAAGTTTTTCCGGCCGGATAGACTTAAAAGCCACAAGGATAGGTACGGCCACGACGAGAGCAAGGTATGCTCAGAACCGCAGAAACCGCCTGACGACAAGTCGGCCATCAAGCTGATAAACAGCTGGATAAGGGAGGAGTTGGACTCGGACAACGAGGGCAAGGGTTTTCCTTGTAAGCTCTGCGGCAAGTCGTACGACACGAAGAAGTCCCTGGTGAAGCATCAGGTGAACGCGCACGAGACGAAGCGGGATCCGTACTGCGCGAGCAGCAAGGACCATCTGGAAAGAGGCGGCCCGGAGAAGTCGAAGCCGTACACGTGCGAGGAGTGCAACAAGTCGTTCGAAAAGGAGATCAAGTTACAGCGGCACCTCCGTATCCACGAGCGTGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGCTTCCTCTGCCACATATGTAGCAAAACGTTCCGCCAGAACACCGGGCTGATGTTCCACATGCGCACGCACACCGGCTACAAGCCGCACGTGTGCAAGTACTGCGGCCGCGGCTTCACGTCCAACTCGAACTGCATCAATCACGAGCGGACCCACACGGGCGACCGGCCGTTCGTTTGCCAGTACTGCAGCGCGGCCTTCGCCAAGTCTTGCACCCTCAAGGCACACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAAACCTGCGGCAAGTCGTTCCGCCGGCTGAAATACCTCAAGGAGCACCGTTTCACGCACACCGGCGAGAAGCCGTACGCGTGCAAGATATGCGGCACCGCGTACAGCCATTCCGGCAGTCTGTTCGTGCACGAGAAGAAGTGCAAGGCGCAGTACAACAATTATCAGCCGAGCGTGGCGCAAAACGCGCAACAGGCCGCCTACGGTCAGTCGGCCGCTCAGATCGTCGCCGGCGGCGTTTCCGCGGCATCCCCCTCGGTCATCACGCCCATCATCAATACGTTGCCGCAGGCGCAGCTGAGCGTAGTCAATAGTACTCTGAACGTGCAGACGGGCAAGAATTACGTGGACAACGTTCAACGGACGAGTGCGGCGCACACGGCGAGCACCGCAGTCGTCTCGTCGAGCCTGCACTCGAGTGCTGATATTCCCGAAATGAATACCCCCGTCAAGAATTTCGCCATTATTGGGCAGATGTTTCACATGTAG
- Protein Sequence
- MRREQVLNVPSEINHVEDIPIDDELDMDCVSKSKQVGYEKATKKEACRTRRFTMFKRVTSMENLKNYKERQRRYIKKSVKRDASDSECHTRTRNAHSRTDETSEYELQYKCSKCDRLYSSKKSLDRHTLTHNEKKFKCDDCDKEFFCLDKLLKHVNLHKTKEKPKPVSCRICNKSFRKTDTMVRHLNVHKKVNPKEVFCILKEIRDKRKSENILESSDESHNMLLTGKDEETTNDEKSQSENDGTTRELRKRSVRAEQRSSDLLNSDSSDDRFEPSCDASFYHCEHCSKRYSTERALQRHLLVHDEKKYVCNVCNMKFFRPDRLKSHKDRYGHDESKVCSEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCKLCGKSYDTKKSLVKHQVNAHETKRDPYCASSKDHLERGGPEKSKPYTCEECNKSFEKEIKLQRHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPSVAQNAQQAAYGQSAAQIVAGGVSAASPSVITPIINTLPQAQLSVVNSTLNVQTGKNYVDNVQRTSAAHTASTAVVSSSLHSSADIPEMNTPVKNFAIIGQMFHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -