Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:12712167-12724226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.9 7.2e+02 0.4 0.4 3 13 53 63 52 65 0.85

2 14 0.014 1 9.3 0.5 8 23 102 117 92 117 0.82

3 14 3.4e-05 0.0024 17.6 0.4 1 23 154 176 154 176 0.98

4 14 7.3e-05 0.0053 16.5 0.6 2 23 239 260 238 260 0.94

5 14 1.3e-05 0.0009 19.0 2.1 1 23 266 288 266 288 0.97

6 14 0.0031 0.23 11.4 4.1 1 23 294 317 294 317 0.97

7 14 0.019 1.4 8.9 3.9 1 15 1004 1018 1004 1022 0.85

8 14 1.5e-05 0.0011 18.7 4.9 1 23 1032 1054 1032 1054 0.99

9 14 2.7e-06 0.0002 21.0 1.6 1 23 1060 1082 1060 1082 0.98

10 14 3.4e-05 0.0025 17.6 1.5 1 23 1088 1110 1088 1110 0.97

11 14 2.9e-06 0.00021 20.9 3.2 1 23 1116 1138 1116 1138 0.98

12 14 1.9e-06 0.00014 21.5 2.7 1 23 1169 1191 1169 1191 0.96

13 14 2.7e-05 0.002 17.9 0.7 1 23 1197 1219 1197 1219 0.97

14 14 2.4e-05 0.0018 18.0 6.6 1 23 1225 1247 1225 1248 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.9	7.2e+02	0.4	0.4	3	13	53	63	52	65	0.85
2	14	0.014	1	9.3	0.5	8	23	102	117	92	117	0.82
3	14	3.4e-05	0.0024	17.6	0.4	1	23	154	176	154	176	0.98
4	14	7.3e-05	0.0053	16.5	0.6	2	23	239	260	238	260	0.94
5	14	1.3e-05	0.0009	19.0	2.1	1	23	266	288	266	288	0.97
6	14	0.0031	0.23	11.4	4.1	1	23	294	317	294	317	0.97
7	14	0.019	1.4	8.9	3.9	1	15	1004	1018	1004	1022	0.85
8	14	1.5e-05	0.0011	18.7	4.9	1	23	1032	1054	1032	1054	0.99
9	14	2.7e-06	0.0002	21.0	1.6	1	23	1060	1082	1060	1082	0.98
10	14	3.4e-05	0.0025	17.6	1.5	1	23	1088	1110	1088	1110	0.97
11	14	2.9e-06	0.00021	20.9	3.2	1	23	1116	1138	1116	1138	0.98
12	14	1.9e-06	0.00014	21.5	2.7	1	23	1169	1191	1169	1191	0.96
13	14	2.7e-05	0.002	17.9	0.7	1	23	1197	1219	1197	1219	0.97
14	14	2.4e-05	0.0018	18.0	6.6	1	23	1225	1247	1225	1248	0.96

Sequence Information

Coding Sequence: ATGAGCAGGAACAATCAGAGCGGTGTATCGCTGGCGACACCGCCAGCGATTCACGTTGGACCCATCGTCACACCCGGTTCTAACGAGACCATCTCTATCGTGATACCATTATCGGCTCAGCTGACCACAATGGCCAGCCAGAAGATCGATAAGAACTGTAAGGATTGCAGCAAGGACGTGAAACGACCTGCAACGACCAATCCCATTCAAAGATTTGCGCAGTATGCTTCAATGGTTTCGCGAGTTtaTTTTGAGAACGACAAAACAAAGGGCTGTCCTATTCCCGGGTGCACGCGATACAGACGAGCGTTTTCCCGAGCGCACGATCTGAAGCGGCACATAGCTCGGCACGCGATGCGCAAAGACAAAATACTGCAGGTCGCTCAGCAAAAGCCCGACATGGAGAACGCGAGCGACGTGACCCTGCAGGGCGCCCTTTTGCGCGGCATGGAGGGCGGATATCCCTGTCCGCGCTGCAAAAAGAGATACAGCGACGAGGATAAACTGAAGGTTCATCTGGCCTCTCACGGCAAGACCGTGCCAAAgaacaatcaaataaaaccGGAGGAACATGCTAAGAGCTTGTTGCAAGGCCAAACGACTACGGACAAGTCCTCAGCGTCGAAGGAATCGGCCGATGATGATTTTCTGTTGGAGGAGATGCTGCTGCTGAAAAAGGATTCCCGAAGAACGGACAAGGGCGACTCGAAGATCAGGTGTGACTACTGCTCCAAGACATTCAAAACCAAATGGACCCTGAGCTCACACGTGGCCGCACATGAGGGCCGTTTCCAGTTCGATTGCGGCCAGTGCGGCAAGAAGTTCGTCAGGAAAAGCCATTACGAGGGCCACGTACGCTCCCACGAGGCCGCCAGGCCCTACGTCTGCGAGCAGTGCGGTAAGACGTTCAAAGAAGTCAAACACCGTCGAGAGCACACCAAAAGGAAGCACCCGAGCAATCAGAGCGCGATACAGAGCTTGCTGGACAGCATCGGGCCTTGCGCGGCCGAAGAGACGAACATCGATCAAGCCAAGTTTACTCTGCTGATGCCCGTGAACTTCGGCGACAAGTTTGAATCCGAGAGAAGCCAAATGAGCGCGAAACGGCGGAGAGTGAGCTCGCGATGGAAGCAAGACGCGCGAAGATGCGAGAGTCTGCAGAGCACGTTAGATCATTTGCCACCGGAAGTCCTCAGCATCATCTTGCGGATGCTGTCCTTGCACGACATTGCTTGCACTGTTCGTTTAGTCTCCAGACGTTGCTGCAGCATTGCCGCTACGGTATTGAACAGCGAGTTTCTAGTAGCCGGCACCAAGCTGGAAATCGCGGTGAAGCGCATACAGAATTTCATGAACAATGTAAGGACATATGCGGAAGTGCTGGAGTGCAGCAGGATCTTCAACGCGCTGGAGCTCATCCGGTCCCAGTACCAAATGCTGAAGGCAGTCACGTGGCGGTCCCGCGCCTTGCCTACATCGTGTTTCTACGGCGGCAGGGTCCTTGACAATCTGAACTGTTTACTTCAGACGGTCTTGGATCTCTGCCAAGGATCCTCGAATGCTCTCAACTACGTCGACCTTCAGATCTTCGCGCGCAGCTGTGAAAATTTCATGGACCACTTCGAGAAAGTTACCGAGTGCAGGATAAACAGATCCGCACTGGTTTCTGGATGTAAGATAGTCGACGTCCTGGACTGCTTGGGGGAGGGTCGACAAGTGGTATCTTTCAGGACTTCCTCGAGAACGGGCAATCCCGTGATCAGCATGCAACTCAAGTACGTCCTGAGACGCACATGGTTCACGTGCCTGCGAGTGCCTAACGCGGGCAACGAGAGTTGTTGGCGGGACAAGCAGCGCTATATGTACCTGAGACTGCGCCGGCTAGTCAGCAACTTCAACAAGCACTTGTTCCACAAGCTGCACTATGAACGCAAGCTCGTCGTACAAGCGACGACATCGCACCAGTCGTTACCACCTCGAAGATCGCCGCCGGCTTCCACGTATTCAGGATACGGCGAGTACGGCGGACAGTTCTTCTTTTACGGCAATATGAGCAAGTACGCCTACGagagtaaatttaaatacgtgaAAGCCAACAACATGGAGAATACAGGCGAAGAAATCGAGGACGAAATTAATTCAGCGCCCCGCTTCGACTTGGTCATTGGGGTTCAATTGAGATGTTCCCCAGAATTAGCACCATTAGCGGTGAGATCGGATCTGAATCTCGACGATCTCGAAGGCTGTGCCAGTAATCCGCGTCAGGAATTGTATTTAAAACTGGATACAAAGTGTGCAGCGTCCAAAGTTAACAGACTGCCAAGCAGCTTTATCTGGGAATACAGAGGACAGAGTATGATATTCCCTAaggattttaaaaaatgtgctATAATGAGCCAGGAGTGTCCAAACTGTAAGCAATTTACAAACGCATCTTTCTCAAGGCTCGTAAAGGATAGCTGTGGCCATACCAAATGCCGAATGTGTTTGCTGTATGAGGAGCACGGATGTAAAATTTGCCAAGCTGAATGCTTGACCCAAAGCGTTCAAGATTACTcgaaaGAAACATGTTCCATAAATAAAGATCCAAGTCAAACAGATAAACCATCCAGCGAAGAATTGGTGTTTCCATTGGAACTCGTCATCAACAAAGACTCCAAGTTCAAAGACAGCCATTCCGATTCAATCTCTATTGAATGCAGATCGCCAGATCTCCATGATGATGAGAATGCTTCCTTCGATGACAATGAAACATATCAATCTCAAGCAATAAATGATACGGACATTAATAACGCTCCTGACAAACTGTCCATTCCAACAATAGAGGCCTGCAATTTTGTGCGAAACATTCGCAACCACTTGAGAAATGAAGATGATCACGATTCAGTTAGCTTGCGGAATCTACATGATAATCAGgtggaaaagaaaattgatgaAGTGGTGGTGGAAAAGAACGTCAAGCGTCGTGATCGCAGTCACATAACGATAGTGCCCGGCAATCCggagaaatataaatgcaacGTGTGCGGTAAGATCTTCCGGAATAAAAAGGGCAAGTGCTATCACGACGCTTGCGTGACAGGCATCAGACCTTACCAGTGCACCTACTGCGACAGGAGTTTCGTCAAACGCTCGCACTTTGAGTACCACGAGAGAATGCATAAGGGATACAAGCCATACAAATGCAACCTCTGCGAGAAGGCTTTTCCCCAGCAGAATAAGCTCAATCGGCACATGTTCTCACATAGCAaagAGAAGCAGTTTGCATGTCGCAAATGCAACAAACGTTACAGTAAGCGAGACGACCTGAAGATTCACCTAAACGTTCACAATGCAACGACCATGTACAATTGCAAGTCCTGCGACAAGTCTTTTCAGATGTTAACAAACTTGAAACGCCACATGCGAACGCACATAATACGACGAAGTGGTCGTGATTTCTTAGACACTCAGGAGACGAAAAGTAACGAGCTGATCGATATCATTGTCACAGGCGAGCGATCACACGCGTGCGATCAGTGCAACAAGAGTTTCAAGGATAGATCCTTACTGATACGACACAAACGGATCCACGGAAAGGAAAGGCCGTTTTCCTGTGCCGATTGTAACAAGGTGTTCCTGTCGAAAAGCGAGCTGAGACGACACTTGACCGTGCACCTAGACGAAAAACCATTCTCCTGCGAGTACTGCCAGACGCTGTTCAGGCGCAAGGACAATCTAAATCGACACATACGGCACCATCACACCGAAGACCTGAATTGTGAGACGCGCAAGACGGCGATCGCCGAAACGGATAGCCGGAGCAGCTCGGCGAAGAGTGGTCAGCAACGGCAAAGGCAGAAACCGAAGGCGCCACCGAAGAAGACGCAGGCGAGGAGTCCCGACAAGGTCGCCACGATATCCGCGAGTTCTCGTGATCCGATCAGCTCTCGGCTGGACCTCATGGGTAACATCACCCCCGTGATAAGAACCACTAGCGAAGTGAGCAATGCGGTACCGGTGATCAATGGACCCATCAGGCGGCCGGAGGACAGGACCGACCAGAAGATGTTCACGCACATTGAGCCGATTCCAATTGCCGAGGCGGTAGTGCTCAACTGCCGGATCGAGGAGAAGCTGTACCCGCAGAGCGCCAACAGCCACGACTACTTCGTGCGCAGTTACCTGAAGGACAGAGGTTCGAGGTTGAACTCCTGCAGCGCGTATTCCAAGCCTGCATCGCAGGAGAACTGTACCGCTGCGGCCGCATCGTCACAAATCGAGTCGTCTCTTCCAAGAACGGTGGGAGGTCGGAAGGATTCCGCGGTTGACCTCTACGAGAGAGAAATCGTGAGGCAGCATCATCATGAGGAGCAACATCAGAGTGACAATCAGGATGAGGACGAGGAttcgaggaagaaagaaggaagaattCGACAACGAGAAAGGAATTCCAACGAGTATGAGGGGAATCCGAGCGCTGCTACACTTCGGGAATCGAATTGCGTGCCTACGATCAAGAAACGCTCGGTGCGACACTCAGAGGGGCACTCGAGCGAGATCTCGGCAAGTGACGGTGCTTTAAATCGAGATATTGGTGATTCGGAAGCGACGAGTAATTTAGCACTGCCAAAGAATCATCAAGACGGCTGCAAGAGGCAGCAAAGCGACGTACACTGGAGACGCAGAATTGCAGAGACGCTGAAGCCGTGCTGA
Protein Sequence: MSRNNQSGVSLATPPAIHVGPIVTPGSNETISIVIPLSAQLTTMASQKIDKNCKDCSKDVKRPATTNPIQRFAQYASMVSRVYFENDKTKGCPIPGCTRYRRAFSRAHDLKRHIARHAMRKDKILQVAQQKPDMENASDVTLQGALLRGMEGGYPCPRCKKRYSDEDKLKVHLASHGKTVPKNNQIKPEEHAKSLLQGQTTTDKSSASKESADDDFLLEEMLLLKKDSRRTDKGDSKIRCDYCSKTFKTKWTLSSHVAAHEGRFQFDCGQCGKKFVRKSHYEGHVRSHEAARPYVCEQCGKTFKEVKHRREHTKRKHPSNQSAIQSLLDSIGPCAAEETNIDQAKFTLLMPVNFGDKFESERSQMSAKRRRVSSRWKQDARRCESLQSTLDHLPPEVLSIILRMLSLHDIACTVRLVSRRCCSIAATVLNSEFLVAGTKLEIAVKRIQNFMNNVRTYAEVLECSRIFNALELIRSQYQMLKAVTWRSRALPTSCFYGGRVLDNLNCLLQTVLDLCQGSSNALNYVDLQIFARSCENFMDHFEKVTECRINRSALVSGCKIVDVLDCLGEGRQVVSFRTSSRTGNPVISMQLKYVLRRTWFTCLRVPNAGNESCWRDKQRYMYLRLRRLVSNFNKHLFHKLHYERKLVVQATTSHQSLPPRRSPPASTYSGYGEYGGQFFFYGNMSKYAYESKFKYVKANNMENTGEEIEDEINSAPRFDLVIGVQLRCSPELAPLAVRSDLNLDDLEGCASNPRQELYLKLDTKCAASKVNRLPSSFIWEYRGQSMIFPKDFKKCAIMSQECPNCKQFTNASFSRLVKDSCGHTKCRMCLLYEEHGCKICQAECLTQSVQDYSKETCSINKDPSQTDKPSSEELVFPLELVINKDSKFKDSHSDSISIECRSPDLHDDENASFDDNETYQSQAINDTDINNAPDKLSIPTIEACNFVRNIRNHLRNEDDHDSVSLRNLHDNQVEKKIDEVVVEKNVKRRDRSHITIVPGNPEKYKCNVCGKIFRNKKGKCYHDACVTGIRPYQCTYCDRSFVKRSHFEYHERMHKGYKPYKCNLCEKAFPQQNKLNRHMFSHSKEKQFACRKCNKRYSKRDDLKIHLNVHNATTMYNCKSCDKSFQMLTNLKRHMRTHIIRRSGRDFLDTQETKSNELIDIIVTGERSHACDQCNKSFKDRSLLIRHKRIHGKERPFSCADCNKVFLSKSELRRHLTVHLDEKPFSCEYCQTLFRRKDNLNRHIRHHHTEDLNCETRKTAIAETDSRSSSAKSGQQRQRQKPKAPPKKTQARSPDKVATISASSRDPISSRLDLMGNITPVIRTTSEVSNAVPVINGPIRRPEDRTDQKMFTHIEPIPIAEAVVLNCRIEEKLYPQSANSHDYFVRSYLKDRGSRLNSCSAYSKPASQENCTAAAASSQIESSLPRTVGGRKDSAVDLYEREIVRQHHHEEQHQSDNQDEDEDSRKKEGRIRQRERNSNEYEGNPSAATLRESNCVPTIKKRSVRHSEGHSSEISASDGALNRDIGDSEATSNLALPKNHQDGCKRQQSDVHWRRRIAETLKPC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -