Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:496749-501873[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.013 0.93 9.5 0.2 1 20 69 88 69 90 0.94

2 13 2.2e-06 0.00016 21.3 0.2 1 23 163 186 163 186 0.94

3 13 4.7e-05 0.0034 17.1 3.4 2 23 193 215 192 215 0.95

4 13 0.00015 0.011 15.6 1.6 1 20 221 240 221 242 0.95

5 13 2.8e-08 2.1e-06 27.3 2.2 1 23 253 275 253 275 0.98

6 13 0.00013 0.0091 15.8 0.7 2 23 285 306 284 306 0.97

7 13 0.00036 0.026 14.4 0.3 2 23 313 334 312 334 0.97

8 13 2e-06 0.00014 21.5 2.3 1 23 340 362 340 362 0.99

9 13 1.7e-06 0.00012 21.7 2.6 1 23 368 390 368 390 0.94

10 13 2.6e-05 0.0019 17.9 0.6 1 23 396 419 396 419 0.93

11 13 6.7e-07 4.8e-05 22.9 0.4 1 23 425 447 425 447 0.97

12 13 1.1e-07 8.3e-06 25.4 0.5 1 23 453 475 453 475 0.99

13 13 1.4e-05 0.001 18.8 1.5 2 23 482 504 481 504 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.013	0.93	9.5	0.2	1	20	69	88	69	90	0.94
2	13	2.2e-06	0.00016	21.3	0.2	1	23	163	186	163	186	0.94
3	13	4.7e-05	0.0034	17.1	3.4	2	23	193	215	192	215	0.95
4	13	0.00015	0.011	15.6	1.6	1	20	221	240	221	242	0.95
5	13	2.8e-08	2.1e-06	27.3	2.2	1	23	253	275	253	275	0.98
6	13	0.00013	0.0091	15.8	0.7	2	23	285	306	284	306	0.97
7	13	0.00036	0.026	14.4	0.3	2	23	313	334	312	334	0.97
8	13	2e-06	0.00014	21.5	2.3	1	23	340	362	340	362	0.99
9	13	1.7e-06	0.00012	21.7	2.6	1	23	368	390	368	390	0.94
10	13	2.6e-05	0.0019	17.9	0.6	1	23	396	419	396	419	0.93
11	13	6.7e-07	4.8e-05	22.9	0.4	1	23	425	447	425	447	0.97
12	13	1.1e-07	8.3e-06	25.4	0.5	1	23	453	475	453	475	0.99
13	13	1.4e-05	0.001	18.8	1.5	2	23	482	504	481	504	0.95

Sequence Information

Coding Sequence: ATGGGTGAAGCTATGGAGAAGATAGAGATTCTGAGAATACAAGATTGCGACGAGGCTATACTGATTGAGGATGCAACCACTGAgattttatttgATACATCCAACTCGGATTCAGCAGAGCATATTATAGTGACCGATGAATTGGATGTTGAGAAGTTGAAAGTTGTCACGGACAGTGATCAGTTCATTTCAGTCATAACTGATTACGAGTGTGTGACGTGTCACCGCATCTTCCAGTCTGAAGATAGGCTGAAAGAGCACCTGGACATATGCAGGGAGGAGGATGACGTCACCAATATCATAGACTTTGAAACAGTGAACTACGACTCCGACGAGGATGACGTGGATGATCCTCTTGAGTACGCCGAAGATTCAGACACCAACAGCCAGAAGAACAACAATGAGAAGCCCGTGATCAAGCCCGTGCCGGACACGCAGTGTCACTGCTGCGCGGAGGACCTGAAGACGGCGCACAGTGGCGGCGACTTCAAGTGCCCCAACTGTGATCTCAGTTTCAGGAAGAAGGCGTCTCTGGAACGGCACGTGGTGGTCATACACTGGAAGTGCGACTCGTGCACGTGCGACGAGTGCGGCTCCTCTTTCCGCGACAAGAAGGCGCTGAACAAGCACCGCTACACGACGCACGGGGATCGCAAAATTTACAAGTGCGAGCCCTGCGATACGTATTTCTCGCGCAGTTACCACTTAAATCGCCACATAACGCAGTCCGGCTGCCACGGCAACATACGCAATTCATTTAATTGCCagGTCTGCAAGAAAGTTTTCACGCGGAAGGACAACCTGCGGGAGCACCTGCGCACTCACGCGGGAACGCCTCAGCGGCAGAAGAAGCCTTGCCAGTTCTGTCCAAAGCAGTTCTACACGAGCCAGCAGTTACTGGTGCACGAGCGCATGCACACGGGAGAGAGACCGGTCCAGTGCGATCTGTGCCCGAAAACGTTTCTGTCAGCGCTCGCGCTGAAGAAGCACCGCCGCGTGCACACCGGCGAGAAACCGTTCGAGTGTAAATACTGCCAGAGGAAGTTCGCCGCGCGCGAGACGCTGAATCGTCACCAGCGGACCCATACCGGCGAGAAGCCGCACGTGTGTCAGTATTGCGGTAAATCATTCATACAGGCGTCCCAATTGAGAGCGCACGTGTTCCATCACACCGGCGAGAACGGCTTTGATTGCGACGTGTGCGGCAAGGCGTTCAACCGGAAAGCACGCCTGAACATCCACAAGAAATTCGTGCACGAGGGAGCGATCCCGTTTACGTGCGAGATATGCGACAAGGGCTTCACGCGGAGAGAGGATTTGGTGAAACACACGCTGCTGCACACTGGAGTCAAACCGTTCAAATGTGACAAGTGCCCGAAGGCATTCTCGGCAAAGTCGTCACTGCAGGCTCACCTCAATACGCATCGACGCGAGCCGCCGCAATCGTGCGTCGAGTGCAACAGGGTGTTCATCCGGCAGGATTGCCTGATGCGGCACATTCGAGCGAAGCATCGGGATCTGCTGCAGGACGTGATGAACGAGGTTGAGAAGAAGCACCTGCAGACGCAGATGCAGAACATAGCGTCGATCGCCGCGGCGAAAATCAAAACCGGAGAATCCCGGCGGCTCAGCACCGACGAGCTGTTGAAGTCCATCATAGACCTCCTGAAGATGCTCATCGACGAGGAGACGTTGCagCTGTTCGGTTGGCCCGAGGCTCCGATACAAGACGTTCTGGAGGCGGTGATTCGAAGATGCGGCCACGAGCCCGTGACGTCGGAGGTCTGCACGCTGTTCACCGAGAGGCTACGACAGAACGTCAAGCTTCTGTTTCTCGCCGTAATCGGGGACGACAAAGTGAAGTCCCTCCTGACGACGAAGACAGTGGATCACGTCATCCTTCACGTCTTAGAAGCGTCTAAAGAGTAA
Protein Sequence: MGEAMEKIEILRIQDCDEAILIEDATTEILFDTSNSDSAEHIIVTDELDVEKLKVVTDSDQFISVITDYECVTCHRIFQSEDRLKEHLDICREEDDVTNIIDFETVNYDSDEDDVDDPLEYAEDSDTNSQKNNNEKPVIKPVPDTQCHCCAEDLKTAHSGGDFKCPNCDLSFRKKASLERHVVVIHWKCDSCTCDECGSSFRDKKALNKHRYTTHGDRKIYKCEPCDTYFSRSYHLNRHITQSGCHGNIRNSFNCQVCKKVFTRKDNLREHLRTHAGTPQRQKKPCQFCPKQFYTSQQLLVHERMHTGERPVQCDLCPKTFLSALALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQASQLRAHVFHHTGENGFDCDVCGKAFNRKARLNIHKKFVHEGAIPFTCEICDKGFTRREDLVKHTLLHTGVKPFKCDKCPKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRDLLQDVMNEVEKKHLQTQMQNIASIAAAKIKTGESRRLSTDELLKSIIDLLKMLIDEETLQLFGWPEAPIQDVLEAVIRRCGHEPVTSEVCTLFTERLRQNVKLLFLAVIGDDKVKSLLTTKTVDHVILHVLEASKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: -
80% Identity: -