Obir007187.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:10905495-10918204[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 1e-05 0.00075 19.2 1.4 1 23 261 283 261 283 0.98 2 32 0.0065 0.47 10.4 2.5 1 23 306 329 306 329 0.94 3 32 7.5e-05 0.0054 16.5 0.7 2 23 336 358 335 358 0.96 4 32 0.0033 0.24 11.3 0.1 1 21 378 398 378 399 0.95 5 32 0.00083 0.06 13.2 0.2 2 23 496 517 495 517 0.95 6 32 0.0056 0.41 10.6 0.4 2 23 524 546 523 546 0.91 7 32 4.4e-05 0.0032 17.2 0.1 1 23 618 641 618 641 0.96 8 32 0.002 0.14 12.0 0.6 1 23 647 670 647 670 0.96 9 32 0.051 3.7 7.6 0.8 1 23 683 705 683 705 0.97 10 32 2.9e-05 0.0021 17.8 0.9 3 23 750 771 749 771 0.96 11 32 0.0016 0.11 12.4 0.1 1 23 802 825 802 825 0.96 12 32 0.0045 0.32 10.9 0.5 2 23 832 855 831 855 0.94 13 32 1.3 96 3.1 0.0 2 23 864 886 864 886 0.90 14 32 0.0096 0.69 9.9 0.1 2 23 893 915 892 915 0.95 15 32 1.1e-05 0.00077 19.2 1.2 1 23 923 945 923 945 0.98 16 32 0.043 3.1 7.8 1.0 3 23 982 1004 980 1004 0.93 17 32 0.00017 0.012 15.4 3.3 1 23 1007 1030 1007 1030 0.97 18 32 0.00068 0.049 13.5 0.2 2 23 1037 1059 1036 1059 0.95 19 32 0.00075 0.054 13.4 3.9 1 21 1086 1106 1086 1107 0.95 20 32 0.0022 0.16 11.9 1.8 2 23 1121 1142 1120 1143 0.93 21 32 0.29 21 5.2 1.1 1 23 1146 1169 1146 1169 0.94 22 32 0.0025 0.18 11.7 1.5 2 23 1176 1199 1175 1199 0.94 23 32 2.5 1.8e+02 2.3 0.2 2 23 1207 1229 1207 1229 0.94 24 32 2.7 1.9e+02 2.2 0.0 2 23 1236 1258 1235 1258 0.88 25 32 0.18 13 5.8 2.7 2 23 1267 1289 1267 1289 0.96 26 32 0.67 48 4.1 0.6 2 23 1295 1317 1294 1317 0.91 27 32 0.01 0.75 9.8 0.1 1 23 1381 1404 1381 1404 0.95 28 32 0.00034 0.025 14.4 1.0 1 21 1432 1452 1432 1453 0.94 29 32 0.26 19 5.4 1.9 2 23 1554 1576 1553 1576 0.94 30 32 0.11 8.1 6.5 1.3 2 23 1583 1605 1582 1605 0.95 31 32 0.57 41 4.3 2.5 1 23 1616 1638 1616 1638 0.97 32 32 0.027 1.9 8.5 0.2 1 19 1642 1660 1642 1663 0.94
Sequence Information
- Coding Sequence
- ATGGCGACGATATCGACGATTACGGTGACGACGGTCACGACAACCACAACGACGGAGACGTCGGCGACAACGGTGCAGGAAACAAACGCGGCATCATCCTCGTTGCCCTCGACCGCGACAACCATGGAGTCGAAGGAACGTTACGACGAGCTCTGTCGCCTGTGCGCCTCCTACAACGCGATCAGGATGAACATATTCGGCCAGGAAGGCAAGAACCGACAACTCGTCGACAAGATTCAGATATTGCTGCCGTTCAAGATATTGGAAGATGATTGTCTACCAAAAGTTCTGTGTTATCGATGCATGTTTAACTTGgagaatttttatgattttcgaACTGCGTGTGTGCACGCAGCTGCTTGGTTGAAAAGAAATAGTCCAAGAGAAGGCGCGGACGATGACGGCGCGAATGATAGCGCGCATTGCAAGGACATGCATCTCAAGGGAAAGGAAAACATGCCGGTACTTATCCCGGAGGCGCCTGTGGTCAATCCTAACGCGGCGTTAGGTACACCACCGAGATTAAATTTCGATGGTGAGGCAGATCCCGAGATTGAAGAGATCGTCGACACAAGCGAAGGTACGGATGAAGCAACAGTGGCCGACGATGCAGAAGACAGGAGATCGGAATACGAATACTACATGGACACCATTCCAAGTGATTTTTTGGAGCAAACGCCAATGGTAACCGAGGAGACGGAGGAGTGCGGCGCAAACAACACGGTGGCCGCTCAGGATACCTCCGTGATCTACCCGCACACGTCGCAGCAACACGAACTCTATGTCTGTTCACGATGCAACAAGGCATTTAGCTCGAAGGGTCACTTGTCGCTGCACGCTCGGATTCATGCGGGTGAGGGCGACGTGATCGGCGAAAGGGTGATCACTGACGACCACACTTCCTATCAGCGACCGTACCAATGTGATCTTTGCCATAAATCGTATTCTACCGCGAAGCATCGCTGGGGACACGTCTCTTCGGCGCACAAGGGACATCCTGCGGTAACGTGCGCGTATTGTTCGCGAATATACTCGACGCGATACAATCTCAATGAGCATATAAAATCACGACACGCTGGTCTACCACCGCCTCCGGAGTTACCGGTTTCCTTTTCCCGTGCGGAGACTCGCTATCAGTGTCAGACGTGTCCGATGGTGTATACAGATCTGGCGGAGTTCAATGCACACCGTCAGCTATGCTTCGAAGAGCAGCGTACTGATTTATTGGCGCAAGCCGAGGCGCAGAACAATAAGGGTTTGGATGATACATCCGACATTTCGAGTATAGACTCGGACGACGAGAACAGAGACTTCAAAAACGCCGAGGCTAAATTGGCGAAAAATCCGCAGTTGACGATATTAAAGCAAGCACTGACCAAGGGAGACGGCTTAAAGCGGAATTACGACGACGATGGTTCGTTGTACGGCAAATCGAGGAAGATTATAAAGACCGAAAGTGGAGACACGAGTTCTCAGAAGAGATGGTATTGCGAGACCTGCCCGCAGAGTTTCACATCGGTGGATAGTCTGAAGGAGCACGAGATCAAGCATGACGCGGAGAAGCCATTTATTTGCATACTCTGTAAGAAGGATTTCGTTTTGAAGTCCTCGTTGAGCAGGCACATCATAACGTTACATGGCGTCGATCCCACCCCCATTATCGACAGCGACAAGTGTCTAAAGGCGACCGTGTTGTCGCAGAATTGGAACGATCGGATGGACGTAAGCGTTTACGAGCAAAGCGAAATGAAAGAACCACCAGAGTTCTCATCGTCACCTGAAGCGACCCTGGAAATTGATGAGAAAGACTCCAAAAACAACCACGATAATATGATAGAAATCGAAACAGTATTTGTATGCGAAATTTGCACGAGAGACTTTAGTGACCGAGCGTCGTTGTGGTTACACATACGAGCGACGCATAAGGAGCTGGCCGCATTCGCCTGTGGGGTCTGCTTAAAGATCTGTTCCGATAACGAGCAGCTTCAGAATCACGTCAACATGTATCACGGAGGATCGAAGCTTCTAATTTCGGAGCAAAGAAGGTATAGCTGTACGATATGTGGTAGACAACACGACTCGAGGAAGAAGCTAATTGCTCACGTCTCGATACACAACATTGATTCCGGGTTTGATCCCGCGAATTTTGTACAGTTAAATAGTAATTACTACAATGAGAATTTGAATGGTAATGAGGGCAACGAGCAAATAATAGATTTCGACGGGGAGGACGGCGAGAAGGTTGACTGCTACATTTGTTACAAATCCTTCCCGAACGAGGATCATCTCATACGGCATCAGAGAAACGCTCATAAGTCTGAACAGATAGTTTCATTGGGAGACGGTGCGGGAGGTGCAAGTGCGCTTAGCGTTAACGGCAATAAGACGCagtataatttctttttcgtgTGCGAGGTATGCGGCAATTCCTTTTCGAGCAAATGGGAACGCTGGCTGCACATCAACAATATGCACAGCAACGAAGCTTCCATTAAGTGCGAATGGGAGGACTGCGGGAAGATATTCGCGACGAAGTCGTTGCGCAACGAGCACGCCCAGCATCATTTGATGCAGGGCTCGTCGCCGAACACCTGCGAGGTGTGTGGGAAACTGTGGCCTACCCGCGTCGACTACTGGAAACACGTGATGGGGGTGCACTCGGACACGGTGCCCCTGATCTGCGGTGTTTGCCTGAAAGTATTCTCCGACGTGTTGCAACTAAGCGCGCACGTGAAGACGAAGCATTGGCCGCTGACCAATGGTGATTTTAGCTGTGATATTTGCGGTAGACCGTATTCCAATAAGTCGAAGATGTCCCGACACAGGAAGATTCACGGCTTAGAAGCGGCGATAGACGCCGCGTGTGATAATAGCAGCATTAACGAGACGACGAACGAGTCGTCCAAGCCCGACAACAACGGCGCGGCGGAGATGGAACTGAACTGCGAGCAGTGCCCTGAGCTGAGGTTCTCCACCTTGGACAGTTTATGCAATCATCGACGGATAGTGCACGGGCTATTTCCATGCGATCTGTGCAACAAGTGCTACGGCAGAACGTCGCACTTGTGGAAGCATGTGAATAGGGTGCACAAGGGTCACGTGGACGTGACTTGTCCGTACTGCTTGAAAACGAGCGCATCGAGGGATCATCTGGCGGCGCACATCGCGAAGATCCACAGGTACGAGCCCGCGGTGAGCAAGGACAACCAGAATTACGTCGCTTCTAAGTCCCTGACCATGGAGGACGGCGTTTTGCATTACTGTGAAAAGTGCAACAAGGGATTCCACAAACGCTACCTGCTGCGACGTCACATGAAAGGCTGCCAAAACTACCGTAAGGACCCGGGTGCGCTGCTGACTCGCTGCCGGGCGTGCGAGAGGATATTCAAAGATCGTGCGAGTCTGCAGAAGCACATTGAGAATCATCACAGCACGTATACCTGCCACCTGTGTAACGAGACGATCACGTCCAAGTTGGGTATCATGACGCACAATCGTGTCAACCACATGGATCATCCGGACCTGACGTGCGATCACCTTGGCTGTAAGAAACTTTTCCGCACCAAGGAGGACCTCGAGGCTCATCGGAAGGATCACAAGTACCACAGCAATCCGAACGTCTGCGATTTCTGCGGCGACACTGTCGAGAACAAATTGAAACTGAAGATGCACGTATTGTCGTTACATCGGAACGAGATTGGTGTATCTTGCGGCGTTTGTTTGATTCCGATGAAGGATCCCAAAGATTTGAAGAAGCACGTGGAGGCGGAACATGGCAGCGTTCTCTCCAAAGCAAACACCTGCCAGGTATGCGGCAAGCAATACGCGTCCAAGTGGAAAGCCTTTGATCACACAAAGAAGTGCCATGGGAAGGTGTTCCTCACGTGCAAGCAGTGCCTAGCAGTCTTTACGGATGAGAACAGCATACGCGATCACTACGAGCACGTGCATAATGTACCGAAGGATCAATTGGCCGCTTTCGAGTACAGGATGGAGGTTGGCGTGAAGCGCGAGGGTTACGAGACCCCCGACATCATCGTCAAGGAGGAGCCAGACGATCTCGAGTTCGACGAGGAGATATGCGACGAGAGCTCGAACGACGACAACTCCCGTAAACGTAAGCAATCGTCGAATGACACGTACGACTGCGAGATGTGTCCCGAAGTCTTCCTCAACTTGGACACGCTCGCGCGACATTATCAGAATATGCACAACACCGACCCCGTTCGCATGttcaaaaagttccggaaggATGGCGGTGACGGCAAGCGCAAGATGAGAAACAGGAATAATTTCGAGTGCAAGAATTGCAAGAAGCAATTCTCCACGAAAGCGCTATTTTGGAATCATACCAATGTATGCACGCGGCGAGGTATTCTCGGCAGGTCGGACATGATGAACAACGTGCCAACGTCGATTCTAGAGTCCCACTTGACGAATAACAATCAGATGTCGAGGGAGGAACCGATGCCGTTGCCGAATGAGTCCAACCTGAATATTCCCGACTTTAATCTATTCGAGGGCATTAATCTGCAGTTGTCAGGCCAGAAACCTGTGCCGAATCTCATGCCACTATCGCAGGTGAAGCCAACGGGTAACGGCAAGTGCTCGAGGAAGGACTCGCGCAAGGTGTACGACGAATCGACCAACACCGAGTGCACCTGCGAGGTGTGCGGCAAGCAATGGCCCGCCAAGAAGCACCTGTGGCAACACCTAATTCGTTTCCATCGCGCCGAAGCTGCCGTCACGTGCGGTGTGTGCCTGAAACTGTGCAAATCCTATCAAGATCTGACTAATCACCTGAGAGCCCAGCACGCCCCTGCCCTGTCATCCGAGGGAAATAATTTCACGTGCAAGACATGTGGTAGATATCACAACGCGCGGAGCAAATTGCTGCTGCATATGAGCATCCACATCGGCAACTTCCGATGCAAGAATTGCCAGCAGGGTTTCGCGAACGAGAAGAAGCTTGCCGAGCACGCGACGAGCTGCAGCAGTAAATCAGAATTGGAGGATCACGCTGTAGCGGACGAGGACAACGCGAAAAATGACAACGATGAGAAGGGCAGTTTAATCGCGGACGAGACCTCGGTCATCGGGGAAGCGGAGGAAGCAGATTTCGAGTCGGAGGGCGATGGGAGCAGGGACATACCCGACGAAGACAGTAATAGCGATGACAATTCGCAAAACAGTGAAGATTCAGATAGCGGCAGTAACAGCAGTTCGAGTGAcgacgaagaagaggaggaggaagaggaagaggaagaggcagaggcagaggcagaggaGAAACAAGAaggcgaggaggaagaggaagaggagaacgcATCTTCTGATGCGAAGACCGGGCTTGATACGAGGAGCACCAGCCGAGCAAGCGGTATATCGTGTAATTCGGATGAGTCGGATTCAGATGAAGCGAAAGTGATTGAACACGTGATGCCGAAGAAAATTGAGCCGCAAATGAGCAATCTGAATAGATTCAGAATACGCAATGAAGGTCTTCAGGAAACGTCGTCGATGGAGAAGAGTGCTGAAGCTCAAAGGATCAATACGGCTATGGCAACAGTTGCAGAGCAAGCTAAACCGAGCAATATGAATAACGTGTCGGTTCCCGGCTCGTCTGCGAGCGTGGACAAACTCGAGGCGTTGCATCTCGAAGAATCCATGAAAGCTGCAACGAACGATGTAGATTTATCTGAGAACGAAAGTGAAAATgaggaaaataatgaaaatgatgaagaagaggaagaagaggagcaggaagaaggagaagaggaagaagaggatgaAGATGAGGATGAGGATGAAGGCGAAGGCGAGAGTGAGAGTGAGCCTGAGGCTGAAGTTGAAGCTGAGGGTGAGGCTGATGCTGAAGTGGAAGCTGCTGCTGAATCTGCGGCTGAAGATGAAGATGaggaagaaaatgaaaatgaaaatgaaagcgaggatgaaaatgaagaagagagTGAAGCCGAGGCCGAAGAggacgaggaagaagagaaagaagacgtAGAGAATGACGAAGAAGAACAAcaagatgatgatgatgatgatgatgatggccCGCCCGTGTTGAGTCCAATAATGCCTTTGTTACCAGAAAACGAGTCGGAGGAGCACAGCAACACTGCGGATCGCACAAGGCACAAGCTCAGTCCGATGGTTTTGTTGAGTGTGGTCAAGGAAGAATGCGACATAACAGAGATTCAGAATGACGGGGCTTCGTCGCACGCTGCAAGTTTCTTCGCAGCTAATAACAATGATCTACCCGTGACGTGGGACGAGGAGTTGAACGATAACGGCGAGCATTGTGACTCTGATGACGACAGGGAGAAGAACGAGGAATACGGTAAGGAATACGAAAAAGTAGACGTAAACGAGGGCGAGGACTTTGAGGAGAACTCCGCGGACGAGAGTGGCAGGGACGTAGGAGACAATCAGGTGCATGAGATACATAATCTAGACGGAACTGTATTAATGGTGGCTAACGACGCGGAAGGTAATCAGATCTTGATTGAGCAAAACGTGTTAGATATCGATAATGATGACTCTAACGCCGAGGGTACGCAGTATATTTACCCAGAGACCGCTTACGAGATCGAGGAGGATTACGCGGCGCGAAATGAGACCGACGCCATTCAAACGGATGAGATACAGGGCATATCGTACGTTCAGGACACGTCGGAAAACGAGGATAGCATGGAGGAAAAGTACAGTATCGAGGAGAATAGTAGTGATGTGCAGAAGTAA
- Protein Sequence
- MATISTITVTTVTTTTTTETSATTVQETNAASSSLPSTATTMESKERYDELCRLCASYNAIRMNIFGQEGKNRQLVDKIQILLPFKILEDDCLPKVLCYRCMFNLENFYDFRTACVHAAAWLKRNSPREGADDDGANDSAHCKDMHLKGKENMPVLIPEAPVVNPNAALGTPPRLNFDGEADPEIEEIVDTSEGTDEATVADDAEDRRSEYEYYMDTIPSDFLEQTPMVTEETEECGANNTVAAQDTSVIYPHTSQQHELYVCSRCNKAFSSKGHLSLHARIHAGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSSAHKGHPAVTCAYCSRIYSTRYNLNEHIKSRHAGLPPPPELPVSFSRAETRYQCQTCPMVYTDLAEFNAHRQLCFEEQRTDLLAQAEAQNNKGLDDTSDISSIDSDDENRDFKNAEAKLAKNPQLTILKQALTKGDGLKRNYDDDGSLYGKSRKIIKTESGDTSSQKRWYCETCPQSFTSVDSLKEHEIKHDAEKPFICILCKKDFVLKSSLSRHIITLHGVDPTPIIDSDKCLKATVLSQNWNDRMDVSVYEQSEMKEPPEFSSSPEATLEIDEKDSKNNHDNMIEIETVFVCEICTRDFSDRASLWLHIRATHKELAAFACGVCLKICSDNEQLQNHVNMYHGGSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNIDSGFDPANFVQLNSNYYNENLNGNEGNEQIIDFDGEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSEQIVSLGDGAGGASALSVNGNKTQYNFFFVCEVCGNSFSSKWERWLHINNMHSNEASIKCEWEDCGKIFATKSLRNEHAQHHLMQGSSPNTCEVCGKLWPTRVDYWKHVMGVHSDTVPLICGVCLKVFSDVLQLSAHVKTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLEAAIDAACDNSSINETTNESSKPDNNGAAEMELNCEQCPELRFSTLDSLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHVDVTCPYCLKTSASRDHLAAHIAKIHRYEPAVSKDNQNYVASKSLTMEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHLGCKKLFRTKEDLEAHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEAEHGSVLSKANTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENSIRDHYEHVHNVPKDQLAAFEYRMEVGVKREGYETPDIIVKEEPDDLEFDEEICDESSNDDNSRKRKQSSNDTYDCEMCPEVFLNLDTLARHYQNMHNTDPVRMFKKFRKDGGDGKRKMRNRNNFECKNCKKQFSTKALFWNHTNVCTRRGILGRSDMMNNVPTSILESHLTNNNQMSREEPMPLPNESNLNIPDFNLFEGINLQLSGQKPVPNLMPLSQVKPTGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLTNHLRAQHAPALSSEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCKNCQQGFANEKKLAEHATSCSSKSELEDHAVADEDNAKNDNDEKGSLIADETSVIGEAEEADFESEGDGSRDIPDEDSNSDDNSQNSEDSDSGSNSSSSDDEEEEEEEEEEEAEAEAEEKQEGEEEEEEENASSDAKTGLDTRSTSRASGISCNSDESDSDEAKVIEHVMPKKIEPQMSNLNRFRIRNEGLQETSSMEKSAEAQRINTAMATVAEQAKPSNMNNVSVPGSSASVDKLEALHLEESMKAATNDVDLSENESENEENNENDEEEEEEEQEEGEEEEEDEDEDEDEGEGESESEPEAEVEAEGEADAEVEAAAESAAEDEDEEENENENESEDENEEESEAEAEEDEEEEKEDVENDEEEQQDDDDDDDDGPPVLSPIMPLLPENESEEHSNTADRTRHKLSPMVLLSVVKEECDITEIQNDGASSHAASFFAANNNDLPVTWDEELNDNGEHCDSDDDREKNEEYGKEYEKVDVNEGEDFEENSADESGRDVGDNQVHEIHNLDGTVLMVANDAEGNQILIEQNVLDIDNDDSNAEGTQYIYPETAYEIEEDYAARNETDAIQTDEIQGISYVQDTSENEDSMEEKYSIEENSSDVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -