Obir002810.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:348140-355159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.2 15 5.7 2.5 1 23 376 398 376 398 0.96 2 19 0.018 1.3 9.0 0.3 2 23 437 458 436 458 0.96 3 19 0.00014 0.01 15.6 1.8 1 23 530 552 530 552 0.96 4 19 0.00081 0.059 13.2 0.8 2 23 556 577 555 577 0.96 5 19 3.8e-05 0.0027 17.4 0.6 2 23 627 649 626 649 0.95 6 19 2e-05 0.0015 18.3 1.8 1 23 654 676 654 676 0.96 7 19 4.2e-05 0.003 17.3 1.0 1 21 682 702 682 706 0.92 8 19 3.8e-05 0.0028 17.4 0.9 2 23 781 802 780 802 0.95 9 19 0.00014 0.01 15.6 5.0 1 23 860 882 860 882 0.97 10 19 0.0002 0.015 15.1 0.7 1 20 887 906 887 908 0.94 11 19 0.00051 0.037 13.9 0.4 2 23 919 940 919 940 0.97 12 19 2.1e-05 0.0015 18.3 0.6 2 23 979 1000 978 1000 0.97 13 19 1.9e-05 0.0014 18.4 1.6 1 23 1005 1027 1005 1027 0.95 14 19 0.00011 0.0076 16.0 2.8 1 23 1033 1055 1033 1055 0.98 15 19 3.3e-06 0.00024 20.8 0.4 1 23 1071 1093 1071 1093 0.95 16 19 2.7e-07 2e-05 24.2 0.6 1 23 1099 1121 1099 1121 0.99 17 19 5.8e-05 0.0042 16.9 0.2 1 23 1127 1149 1127 1149 0.97 18 19 0.081 5.9 7.0 8.1 1 23 1155 1177 1155 1177 0.96 19 19 0.0037 0.27 11.2 0.6 1 20 1183 1202 1183 1204 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACGTCGGAGCCGCCGCAAACGGAGGACGTGGTCGCGTCCACAGTCAAGATATGCCGCGTGTGTTTGCTTGACAACCTGATGATGCGTGACCTCTTCCTTGAGAATGAAACCGCGTCTTTGTCAACGAAGGCGATGAGCTTCATTAACGTTAAGATGTTACCCGGTGATGGTTTACCAGCACAAGTATGCTGTATGTGTGCTGACAAACTGGAGTCAGCATATGAGTTTAAATTACAAGTTGAGCAAGCCGACAATGTCCTCAGAGAGAGATATGTCGGAGGAATTATAAAGGAAGAATTGTTTTTCAACGAAGTCGAGGTACACTTGGATGCTGAAAGGAACGATGACATGGATGAGATGAATATTAGTGATCATTATAATCTTAGTGAACCTGGTGGCGTAGTTTTATCAGAATCAGATGCAGAGAAGAATTTTCTAAAGGATCAGCTAATAATTTTGGAACAGGATAAATTATCACCGAAACCAGAGGAAATGCAACAGAGTGAGAATTCTGATGAAGATAATCCACAGGAGATCACACGAGAAGTCAATGAAAGTATCGTAGAAGAGTTGCAACAAGAATTAGCTAACAGAGAGAACAACGGCATGCCAAGTGCCATGGAAGAGTCTAGGAATCAAAAATCTTTTATGGACGAAAATATCATTCCAAGTTGCGTGGATGCAATCCCAACGGAGGAACATGATTACATCATGCAGCAACAATGTATAGTGTCTATGGAACAGCTTCGTTCACAAGAAGAAATGCAAAAGACGGTATCACAAGTTGAAGAAACCAGAGAGGGATGTCAAGACATGTCCgaggaaaatgaagaaaatcagGAAAGCCAAGCTGGGCAGGATCAAGAGACTGGAATTGAGCAAAATCAAAATGAGAAGTATTTCAAGGAGGAAGTGCCAAAGGTTGATACAAATGAACCAGCAGTGGAACAAGATTCTCAGAACGAAACACGAAGGAGTAAACGCAGATCAGCTCGTCGCACGTTTACCGAAAGGGACTCCGACGAGGAGAACTATTTCGAGAATCTGAATCTGAGTTCCCGATTGAAGAAAGCACAGGCGGACAAGGCAGAGAaaatcttctttttcatttgttacTTGTGCGACAAGCAGTTCTTGTCGAAGAACGTCTTAAAAGAGCATCTGCATTCCCATGAGGAGGTGAGGAGAACGCTGTCTCTGAAAAAAACGCCGGAAAAACCGCAGAAGGTCACACAACAGACTAGCGTCTCCTCCGCGAAGACGCCGCCATCCGGAAAGAAAGCCAACAAGTGTCCTTATTGCGGTAAAGAGTATCTGTacataatttcatttattaagcACATTAAGCAACACGAACGAGAGGAGGAGACGAAGGAGGAGCCGCTATCGTACGAGGCGTTGTTTCAGGAACACGAGGACAGTTTAGACTTTGACGATGGCAATAACTCGGACGGACCGGGCAGGAAGCGAACCAGGAGAGAAAGTACAGGCGACGTGAACGACGATGCCGCGAACGAGGAGGAAAATcaagataaaagaagaaaaaatcatCATCACGTTGAGGAATTCCCGTGCGACAAATGTTCGAAGCAATTCAATACAAAGCGAGGCTTGCAAAAGCACTCGGTCACGCACGTTGGCCTCAAGTGCAGCGTGTGCAACGAGGAATACGATACCCTGGAACAACTGAAAAATCACCGAACGAAACACGTGGTCGAAGGAGTACTCTCCGAACAGGATTTAGAGGAGGACATGAAGCAGATGATAGAAAAAGTTGCGGAGAATGAGGAGGACCAAGGCAACAAGGAGGACGAGAACGTGGCGGCGAGTGAGTCCGCTGAGAACGCGAAAGAACTGAAGTGCCCGAAATGTCCGATGACGTTTTTCCGCAAAATAAATCTGTCCAGACACGTGGAGAAGGCGCATTCTGGGGCGAGCTACACTTGCAAGATATGTCGCCAACAGTTCACGCGAAAGGATCTTCTGCGTAGGCATGCGGAGCAGCACGCACGAGTGAAGGTCTATAAGTGTACGCAGTGTAATAAAACGTTCAGCAACGAGCTTACTCTGAGGAATCACTTGATCGCCACGAGTCACAAGACGTTCATACAGGGACAAGAGTACGATCCGAACAAGCGTATCAAACGCGTGGCCGCGAGGGCGGCACAGAAGATCATTGACAAGATCAAGACAGAAGATGGTTTAGAGGAttacgatgacgacgataacgACAATGTGGATTATGACGCCAAGTTGGACGGGCATTACCGTCGTAAGCGCGATGCTACACCAAAGaagtataattataagaaGGAACTGGAGTGCGCGACATGTAACAAGAGGTACAGCTCAAAACAGGCTTTGACGAAGCACATGGAGCAACACGTGAAGGATGAGAAGGCGGAGAaagcggcagcggcggcagcAGCGGCCGAGAAGCTGAAGAAGGCTACCatggagaaaaaagagaatcaGAAGACGAGTAACTCGGGCGATAACGAGGACGATGATAACGATTCGGACTTTGAGAGCGGACTGGACTGGCCAATGGATAGCCATGAGTGCACCACGTGTAAAAAGCGTTACAGCACAAAGAAATCGCTTTTGCGGCACCAGTTGCTACACGAAGAACCGAATTTTGAATGCGACATCTGCAACGTCAAATTTTATCGCAAGGACAAGCTAAAGGCGCATTACGACAAGTGCTCCGAAAAGAACCCGGATCAGGTAAGGAAGTGCAATATATGTGGTGACAGTTTCGAGAACAACGAGTTGTTACGAGAACACAGAGCCAAACACGTTACGGAGGGTATCTTAACGGAGGAGGATCTGAGGGATATCGAGCCAAAGCCCGAGGAGAAGAAACCAGGTGAGAAGATTGGCCGGAAGAGAAGGACCGACATTGTCGGACTCGAGTGTACCGAGTGCAACAAGCAATACACCTCCCGAAAGGGCCTTTTGCGGCACATTCAGGTGCACGAGGGCAAGAAATACTTGTGTGACATATGCCCGAAAAAGTTTTACCGGCGAGAACACCTGAAGATTCACGTGGCGAAACACAACATGATCAAGCCGTACAAATGCACCCGATGTACCAAGCGTTTCATCAAAGAGGAGCAACTCAACAACCACCTGTCTAAGCACGACCGCACGTTCAAGAAGAACAAAGAGACTGACAGCTCAAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAGTCGACGACGCTGATCGCGCATTTGCGTGCGCATAACGGCATCAAGCCGTACGTGTGCGAAGTGTGCTCGCGACCATTCACCACCAACGCCTACTTGAAGATGCACATGCGTACGCACACGCAGGAACGTCCTTACATATGCCAGTATTGCTCGCGAGCGTTCGCACGAGCAGATACCTTGGCGAATCATGTCACTTCGCATACTGGCGAGGCCAAGTACCACTGCAAATGCTGCACGAAGAACTTCCGGCGTTTGAAGTCCTTGAAGGAGCACATGTTCATTCACACGGGACAGCGACCATACGAGTGTCCGACCTGTGATCGCAAATTCAACAACAACGGCAGTCGTTACGCGCACAGTAAGCGCTGCAAGCAGAATCTTTTGCAGAACCAGAACCGCGCGCAACAGATGATGCAGCAAACAACGCAGCAAccgcaacaacaacaacaacaacagcagcaacaactACAGCCGCAGCAGGTGCAGGTACAGGTCCAACAAATACAGCAGACACAGCCTCATACGGTGAGGATGCATCAGACGACGCTCACCCAGGCACAAGTGGTCAAGGCGCAGAACATTAAGACAATCGCCATAAGACAGGCCGAACCGACCGCAGTGGCGACAACGCAACAAGTGATGCAGCATCAAGAGATACTAATGCCGCTGATCCTACCGCTCACTGTCACTCTCACCGACGTCGGTGAGGAGGTGATACTACCAGAGGGTACAAAAATATTCACCACCTCCTAA
- Protein Sequence
- MDAVEINTSEPPQTEDVVASTVKICRVCLLDNLMMRDLFLENETASLSTKAMSFINVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADNVLRERYVGGIIKEELFFNEVEVHLDAERNDDMDEMNISDHYNLSEPGGVVLSESDAEKNFLKDQLIILEQDKLSPKPEEMQQSENSDEDNPQEITREVNESIVEELQQELANRENNGMPSAMEESRNQKSFMDENIIPSCVDAIPTEEHDYIMQQQCIVSMEQLRSQEEMQKTVSQVEETREGCQDMSEENEENQESQAGQDQETGIEQNQNEKYFKEEVPKVDTNEPAVEQDSQNETRRSKRRSARRTFTERDSDEENYFENLNLSSRLKKAQADKAEKIFFFICYLCDKQFLSKNVLKEHLHSHEEVRRTLSLKKTPEKPQKVTQQTSVSSAKTPPSGKKANKCPYCGKEYLYIISFIKHIKQHEREEETKEEPLSYEALFQEHEDSLDFDDGNNSDGPGRKRTRRESTGDVNDDAANEEENQDKRRKNHHHVEEFPCDKCSKQFNTKRGLQKHSVTHVGLKCSVCNEEYDTLEQLKNHRTKHVVEGVLSEQDLEEDMKQMIEKVAENEEDQGNKEDENVAASESAENAKELKCPKCPMTFFRKINLSRHVEKAHSGASYTCKICRQQFTRKDLLRRHAEQHARVKVYKCTQCNKTFSNELTLRNHLIATSHKTFIQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDDNDNVDYDAKLDGHYRRKRDATPKKYNYKKELECATCNKRYSSKQALTKHMEQHVKDEKAEKAAAAAAAAEKLKKATMEKKENQKTSNSGDNEDDDNDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNELLREHRAKHVTEGILTEEDLRDIEPKPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHVTSHTGEAKYHCKCCTKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMMQQTTQQPQQQQQQQQQQLQPQQVQVQVQQIQQTQPHTVRMHQTTLTQAQVVKAQNIKTIAIRQAEPTAVATTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -