Obir011338.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ooceraea biroi
Gene Symbol
-
Assembly
GCA_003672135.1
Location
NC:8689834-8694983[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.1e-06 0.00051 19.7 3.7 2 23 374 395 373 395 0.97
2 15 0.00031 0.022 14.6 1.5 2 23 402 424 401 424 0.95
3 15 1e-05 0.00074 19.2 1.3 2 23 518 539 517 539 0.97
4 15 1.1e-05 0.0008 19.1 3.6 1 23 545 567 545 568 0.96
5 15 0.0055 0.4 10.6 1.8 1 23 573 596 573 596 0.94
6 15 7.3e-07 5.3e-05 22.8 1.4 1 23 618 640 618 640 0.98
7 15 1.2e-06 8.5e-05 22.2 1.3 1 23 646 668 646 668 0.97
8 15 6.7e-06 0.00049 19.8 2.4 1 23 674 696 674 696 0.98
9 15 0.00095 0.068 13.0 0.2 1 23 702 724 702 724 0.99
10 15 2.9e-05 0.0021 17.8 1.1 1 23 730 753 730 753 0.92
11 15 1.3e-05 0.00096 18.9 1.3 1 23 759 781 759 781 0.98
12 15 0.00029 0.021 14.6 4.7 1 23 787 809 787 809 0.98
13 15 3.7e-06 0.00027 20.6 0.4 1 23 815 838 815 838 0.97
14 15 2.9e-06 0.00021 20.9 0.6 1 23 844 866 844 866 0.96
15 15 6.4e-07 4.6e-05 23.0 4.8 1 23 872 894 872 894 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAACAAAGAAATGCCACTGAGTGTAGAATGGATACCACAAAACACATACACCCATAATTCTTTAGATCATTTGCTACCGGGAGACCGAAATCAGAACAATTTTGTATTCATAAAGCAGGAAACAGATTTCTTTGAGAACGCATTAAATTCACAACTTGTACCAAAGACAGTCATGTGTTTACAAGTGCCATCTAAAGAAAAAGACAAGGAAATTAAGCAACAGAACAGTTGCTCAGATATGCCAGTAACaCCATGTCAAGCAGATTCTTCAAGTCAATCGCCCAAAAAATTGACTGATGTGTCCAAGAGATCGTACAGCAGAGCCTGCATTGATGTGATAGAGATGTTAGTGGAATCGGTATCCGACTACAAGTATCTTTTCATTTACGAAGATCAACTCTCCAAGTTTACTGTGCTAAAAGCTCTCCGTAGCAATACAGCCAAAGAAGTCGCAGCAAAACTGTTAGATGTATTGGCGATTATAGGAGCACCGCAAGTGCTCCAGAGCAGGAATGGACGTATGTTTGCTGAGCAAGTTGTGCGTGAGCTACGTTCGCTGTGGAATGATTTCTTGATATTTCACGGAGATGCATCCAAGTGTGAAGTTAGCTGCAGAGATTTTAAGAGCTCGCTTGAATCCTGGATGAGAAAAAATCCGACTAAGAGTTGGCACGAGGGACTGAACTCTCTGCAAATTCTTCACAACTCGACTTACCGTTGCCAGAACGGCAAATTTCCGTGCGACGTATTATTCAGACGAGATGTGCGCGAGAGCTTTCAGAGTGCGGAGAAAGACGCGGCGGGTCTATGGACGGAGGAAGAGTGGCTCGAATATTTATCAAGTAAAAAAGATACGGTAACGGCGAATAACATGCAGAGCACGTCGGATAATGTTAAATATTCCGAGGAAAACAAACGTGCACAAGACAATACACAAAGCCAGAACGCATCATCTAGGGAGGACAATATAAATGGCTTTAGTTTCGTCAATGTACAGAACGAAATTCTCACGAGCAATACGCGCGCAATTGATTCATCGTGTACAGACAACGTGGACAGAAAGGAATTTCAATCGAAAATTGCCGAGGATGCTCAATCTCTAAAGTGCAAGTACTGCCAGAAGCGATACATCAAACTGGGACACTTGAAGAACCACATGAGAGTCCACAAGGCAGAACGGGTTCTGCGATGTAAATTGTGCAATAAAACGTTCAGCGTTGTTAGATTGTACGCGAAGCACATGAAGCAGTCGCACGGGCAGGATAAATTGCCCGACAAGGAGGAGAAAACGTCGATCAATACCAGAAATACCAGGAGCGACACCGATTCGATGACAACAGTACCTAAGTCTGAGAAGGAGAAGTCCGAGAAGGAAGCGACGCATCGAGTATCCGACATTGAGACCGCGAACGAAGATCGCAACGCGTCATTAGATGTAAAGGATTCGTGTAGCAAGGCCAGCAAAACCTCGAGTCAGACCGGCAGGCGGAAGTCGTCCGCGGAGAGTCACGTTCCGAAGATGCAGTCCGCGTTGCAGTGCATGTATTGCAAGCAGAAGTTCAGTTTCCCCAGCGTGCTGGAGAGGCACATGCGTTCTCACACGAACGAGCGGCCGTACGTGTGCGAGGTGTGCAACAAAAGCTTCAAACAGCTGGGCCATCTCAGCCAGCACTCGCTCACGCATCACGATTACCGCTCGTTCCAGTGCACGGTGTGCGCCGTGAAGTTCGATTCGCTGGACTCGCTGAAGCAGCACACCTCGCACTCGCATAGGGGTGATGCCGCGACcacgacggcggcgacgacggcgaagaTCCGCGACGTTTACCGCCTGTTCGAGTGCGACAATTGCAAGAAGGTGTTCACGACGAAGAGCGTGCTGGAGCGCCACATATTCACGCACACGCAGGAGCGTCAATTCGACTGTAAGGTGTGCGGCAAGCGTTTCAAGCAGGCCGGCCACGTGAAGTCGCACATGCTGGTACACACGGGCGAGCGTCGCTTCCAGTGCACCGTGTGCTCGAAGCGCTTCAGCCTCTCGAACTCGCTGAAAAAGCACATGTACGTGCACAACGGCGAGAAGCCGTACCAGTGCGACGTGTGCGGCGCACGTTTCCTGGAGAAGCGTAATCTCAATGGCCACCTGCTGACGCACACCAACGAGCGCCCGTACTGCTGCAAGATCTGCGGTAAGCGGTACACCCTGGCGGACACCCTGCGCCGTCACGTGAGCGCCGCGCATGAGGACGGACGCACCTACCAGTGCGAGATTTGTGCTAAAATGTTCAAACAGCTGGCACATTTATCGGTGCACAAGAAGGTGCACAACGACGAGCGACCGTTCCAGTGTCACTTGTGCGAGAAGAACTTCAAGCACAAGAATGTCCTGAAATCGCACCTGGCAATTCACGCAAATGTGCGACCGTTCGAGTGCGACGTGTGCAAGGCCACGTTCGTCAGGAAAACGAATTTGCAGACGCACATCTCGTCCGCACACATGAACGAGCGCCCGTACGTCTGCACCATTTGCGGTAAGCGATTTAAGCAGATCAGCCATCTGAACGGCCACGTGGTCGTGCACAGTAATCTCATGCCCTATAAGTGCGATTATTGCGATCGCCGGTGCAACCGTCTGGATAACCTGAAGAAACATATGCGCCTCCATACGAAGAACAAAGAGTGA
Protein Sequence
MTKIRMNKEMPLSVEWIPQNTYTHNSLDHLLPGDRNQNNFVFIKQETDFFENALNSQLVPKTVMCLQVPSKEKDKEIKQQNSCSDMPVTPCQADSSSQSPKKLTDVSKRSYSRACIDVIEMLVESVSDYKYLFIYEDQLSKFTVLKALRSNTAKEVAAKLLDVLAIIGAPQVLQSRNGRMFAEQVVRELRSLWNDFLIFHGDASKCEVSCRDFKSSLESWMRKNPTKSWHEGLNSLQILHNSTYRCQNGKFPCDVLFRRDVRESFQSAEKDAAGLWTEEEWLEYLSSKKDTVTANNMQSTSDNVKYSEENKRAQDNTQSQNASSREDNINGFSFVNVQNEILTSNTRAIDSSCTDNVDRKEFQSKIAEDAQSLKCKYCQKRYIKLGHLKNHMRVHKAERVLRCKLCNKTFSVVRLYAKHMKQSHGQDKLPDKEEKTSINTRNTRSDTDSMTTVPKSEKEKSEKEATHRVSDIETANEDRNASLDVKDSCSKASKTSSQTGRRKSSAESHVPKMQSALQCMYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCAVKFDSLDSLKQHTSHSHRGDAATTTAATTAKIRDVYRLFECDNCKKVFTTKSVLERHIFTHTQERQFDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-