Basic Information

Insect: Ooceraea biroi
Gene Symbol: -
Assembly: GCA_003672135.1
Location: NC:12676267-12691648[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.3e-05 0.0024 17.6 2.2 1 23 449 471 449 471 0.97

2 18 1.3e-05 0.00091 18.9 1.9 1 20 477 496 477 499 0.94

3 18 8.8e-06 0.00064 19.4 1.4 1 23 505 527 505 527 0.98

4 18 5.1e-05 0.0037 17.0 4.4 1 21 533 553 533 555 0.95

5 18 6.9e-06 0.0005 19.8 5.6 1 23 561 583 561 583 0.99

6 18 1.6e-05 0.0011 18.6 5.3 1 23 589 611 589 611 0.97

7 18 6e-05 0.0043 16.8 6.9 1 23 617 639 617 639 0.96

8 18 5.9e-08 4.2e-06 26.3 2.7 1 23 645 667 645 667 0.98

9 18 4.3e-05 0.0031 17.3 6.7 1 23 673 695 673 695 0.97

10 18 1.3e-05 0.00097 18.9 5.8 1 23 701 723 701 723 0.98

11 18 2.8e-07 2e-05 24.1 2.8 1 23 729 751 729 751 0.98

12 18 5.3e-06 0.00038 20.1 7.8 1 23 757 779 757 779 0.98

13 18 1.7e-05 0.0012 18.6 9.1 1 23 785 807 785 807 0.98

14 18 2.2e-05 0.0016 18.2 7.5 1 23 813 835 813 835 0.98

15 18 0.0011 0.076 12.9 8.8 1 21 841 861 841 863 0.94

16 18 8e-06 0.00058 19.6 0.4 1 23 869 891 869 891 0.98

17 18 0.019 1.4 8.9 4.5 1 23 901 923 901 923 0.98

18 18 3.1e-07 2.2e-05 24.0 1.3 1 23 929 951 929 951 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.3e-05	0.0024	17.6	2.2	1	23	449	471	449	471	0.97
2	18	1.3e-05	0.00091	18.9	1.9	1	20	477	496	477	499	0.94
3	18	8.8e-06	0.00064	19.4	1.4	1	23	505	527	505	527	0.98
4	18	5.1e-05	0.0037	17.0	4.4	1	21	533	553	533	555	0.95
5	18	6.9e-06	0.0005	19.8	5.6	1	23	561	583	561	583	0.99
6	18	1.6e-05	0.0011	18.6	5.3	1	23	589	611	589	611	0.97
7	18	6e-05	0.0043	16.8	6.9	1	23	617	639	617	639	0.96
8	18	5.9e-08	4.2e-06	26.3	2.7	1	23	645	667	645	667	0.98
9	18	4.3e-05	0.0031	17.3	6.7	1	23	673	695	673	695	0.97
10	18	1.3e-05	0.00097	18.9	5.8	1	23	701	723	701	723	0.98
11	18	2.8e-07	2e-05	24.1	2.8	1	23	729	751	729	751	0.98
12	18	5.3e-06	0.00038	20.1	7.8	1	23	757	779	757	779	0.98
13	18	1.7e-05	0.0012	18.6	9.1	1	23	785	807	785	807	0.98
14	18	2.2e-05	0.0016	18.2	7.5	1	23	813	835	813	835	0.98
15	18	0.0011	0.076	12.9	8.8	1	21	841	861	841	863	0.94
16	18	8e-06	0.00058	19.6	0.4	1	23	869	891	869	891	0.98
17	18	0.019	1.4	8.9	4.5	1	23	901	923	901	923	0.98
18	18	3.1e-07	2.2e-05	24.0	1.3	1	23	929	951	929	951	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGTGGGTCTTGGCAATATAGGGAGTACCCCCCATTCGTCCGCGGACCTGCGTGTAGGTAGTGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTCCCGGACCGCTATCTCAGGTCTCGGTCTACCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGGCATCATCCTCCAAAGAGCCAGCCTCTTCACTCAACCAGGAAATGGCGTTGACTTCCAGCTCGCATCATCAGCAACAGTCAACCGCCGCGCATCATCATCAGCCTTCGGTTAGCAGCAGCAGCCATCACGGTTCCCTGCAGTCGAATCCGCAGATTCCCGTATCTCTTCCCGGCCTTAATTTAGACGGCGCACATATACCGACGAGTGTTAGTCACCTGCAGGCCGCGCATGCACAAATACAACAAATGCAGGCGCAAGCACAGCAGCAgctgcaacagcagcaacctCCGccgccgcagcagcagcagcagcagcagtctcATCACCAGATGTCGAATCACCAGAACGCCCAGAACAACGGACCTACGTCGCACAGCCAGAACGTGCAGCGTGACGACAACAAAGTCAAGGACGAGGGCGGTAGCTGCACCACCGAGCGCTGCAGCGACAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTgatgcaacagcagcagcagcaacagcagcagcagcagcagatcGGGGTCAGCATCAGCGGGAACTCCACTAACGAGGGGGGAAACCAGAACAACTCCGAGAAGCCCGAAAAGGAGAAGGAATTGCGGCAGCTGAATATGACCCAATTCCAAGTTCCTGACTTGAAACCGGGTGGACACATGATGGACGTGAGAACGGCGGACGGGTCAGTCGTGAAAATAAGCGCCGGAAACGAGCAGGATCTGGCGAAGACTCTTGGTGTCGAGATGGTGCAGAACATGTACAAGgTGAACGTTGAGGACATTAACCAGTTGTTGGCGTATCACGAGGTCTTCGGAAAGTTGCAGAACGAAATCGCGGCCAGTACGACCCTCGTAGGCAGTACCGTTCCAACGCAGACGGTCACTACGATACAAAATGGAACACCGATCGTTCAGCAAGTTCAGCTGAACAAGTTCGACATAAAGTCGAGTGACGGCGAGGCGACGCCTGGCCCGAGCGCGTCGCCCGTCTCGGTTGGCAGCCACTCGTGCGAGATATGCGGCAAGATCTTCCAGTTTCGTTATCAGCTTATCGTGCATCGCAGATATCACACCGAGAGAAAGCCGTTCACCTGCCAGGTGTGCGGCAAGGCGTTCTCCAATGCGAACGATCTGACGCGTCATGGCAAGTGTCATTTGGGCGGATCCATGTTTACATGCACGGTCTGCTTCCACGTGTTCGCAAATGCGCCCTCCTTAGAACGTCATATGAAGAGACACGCCACCGACAAGCCGTATAATTGCACGGTCTGCGGTAAGAGCTTTGCACGAAAGGAACATTTGGATAATCATACGAGATGCCACACCGGCGAAACACCGTATAGATGCCAATACTGTTCGAAGACATTTACCCGTAAAGAACACATGGTAAATCACGTTCGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCTCATCATTGCCAAGCCTGCGGCAAGAAGTATACGCGCAAAGAGCATCTTGCTAACCACATGCGCTCGCACACGAACGACACGCCGTTCCGTTGTGAGATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACTCCGCACCGCTGCGACTTCTGTTCGAAGACGTTCACGCGAAAGGAGCATCTCCTCAACCACGTTCGCCAGCACACGGGTGAGTCTCCACATCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAATCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTCTGCCAGAGGACGTTCACTAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCCTCACATTGTTGCAACGTGTGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTCCCGCTGAAGGGCAATCTTCTCTTCCATATGCGATCGCACAATAAAGGCAGCAACGCCGAGAGGCCGTTCCGCTGCGACCTGTGCCCCAAAGATTTCATGTGCAAAGGACACTTAGTCTCGCACCGGCGCTCGCATTCAGACGAGCGGCCGCACAGTTGCCCGGACTGCGGCAAGACCTTCGTCGAGAAGGGCAATATGCTACGACACTTGCGCAAGCACGCGGCTGAAGGACCGCCGACGCAGGTCAGCACGCCCTCGGCCATACCGCAATCCGGCGTCTTGCCGATCCCGGCAGCAGCCGCAGTCCTGGTCGGACACCCGCTAGCACCGCCAGCACCGCCTGTGGTGGTACCGCAGCACACGGTGGTTGTACCGACACCGCCTGGTGTACTGACATCATAttag
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATVGLGNIGSTPHSSADLRVGSAVALASSVAKYWVLTNLFPGPLSQVSVYHHSHHNSSHRSGGGGEASSSKEPASSLNQEMALTSSSHHQQQSTAAHHHQPSVSSSSHHGSLQSNPQIPVSLPGLNLDGAHIPTSVSHLQAAHAQIQQMQAQAQQQLQQQQPPPPQQQQQQQSHHQMSNHQNAQNNGPTSHSQNVQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQIGVSISGNSTNEGGNQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEIAASTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHSCEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00899003;
80% Identity: -