Obir001776.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- mariner\T
- Assembly
- GCA_003672135.1
- Location
- NC:1414579-1417095[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0037 3.9 6.6 0.0 17 43 80 106 70 108 0.82 2 4 0.0025 2.6 7.2 0.0 16 43 190 217 181 219 0.88 3 4 0.19 2e+02 1.2 0.0 17 39 302 324 292 328 0.78 4 4 0.26 2.7e+02 0.7 0.0 18 39 417 438 410 443 0.79
Sequence Information
- Coding Sequence
- ATGGATGTGTCCAAATCAAGTAAATTGTACCTTCGTCAATTCATGCTTGATTACTTTCATGTGCACAAAAGTGCTGCAGAAGCACATAAACTCATTTGTGACGGGTTTGGAGAGAATATTGTGTCCCTTAGTGACTGTGAGACATGGTTTAACAGATTTGACTCAAGTGATAAAGATATCTCGCAACGTAGGGTAAAGATCGACGAATTGAAAGCAATATGCAAAGAAAACCCACACCTAACACAAGAAGAGCTAGCAAAACGGCTTGGAACTAGTAAATCGACAATAGAGagatatttgaagaaaataaatgaggtagaggagaaagaaaaacaagttGATAAACAGGTGGATAGAGTTTTTCTTGTCCAATTAATGCTTGATTACTTTCACAACCACAAAAGTGCTGCAGAAGCTCAAAGACTGATTTGTGAAGAGTATGGAGAGAATATTGTGTCTCTTAGTAACTGTGAGAGATGGTTTAACAGATTTGACTCAGGTGATGAAAATATCTCGAAACGTAGGGTAAAGATCGaagaattgaaagaaataCGCCAAAGAAACCTAAAACTAACACAAGAAGAGCTAGCAAAACGGCTTGGAACTAGTAAATCGACAATAGAGagatatttgaagaaaataaatgaggtagaggagaaagaaaaacaagttGATAAACAGGTGGATAGAGTTTTTCTTGTCCAATTAATGCTTGATTACTTTCACAACGACAAAAATGCTGCAGAAGCTCAAAGACTGATTTGTGAAGAGTATGGAGAGAATATTGTGTCTCTTAGTAACTGTGAGAGATGGTTTAACAGGTTTGACTCAGGTGATGAAAATATCTCGAAACGTAGGGTAAAGATCGACGAATTGAAAGCAATATGCAAAGAAAACCCACACCTAACACAAGTAGAGCTAGCAGAACGGCTTGGAACTAGTAGATCGACAATAAAGAGATATTTGAGGAAtataaaagaggaagagaaagaaaaacaagttGATAAACAGGTGGATAGAGGTTTTCTTGACCATGAATTAATGCTTGATTACTTTCATAAAGACGGAAGTGCTAAAGATGCTCAAAGACTGATTTGCGAAGAGTATGGAGAGACTATTGTGTCTCTTAGTGACTGTGAGAGATGGTTTAACAGCTTTTGCTCAGATGATTTAGATATTCTACATGTCTCGCTACGTAGGATGGAGATCGAAGAATTGAAAGCAATGCGCAAGGCAAACCCACACCTAACACAAGTAGAGCTAGCTGAACGACTTGGAATTAGTCAATCCTCAATACGCGACTATTTGAAGGAAATGAGAGAGATGGAGGAGTAA
- Protein Sequence
- MDVSKSSKLYLRQFMLDYFHVHKSAAEAHKLICDGFGENIVSLSDCETWFNRFDSSDKDISQRRVKIDELKAICKENPHLTQEELAKRLGTSKSTIERYLKKINEVEEKEKQVDKQVDRVFLVQLMLDYFHNHKSAAEAQRLICEEYGENIVSLSNCERWFNRFDSGDENISKRRVKIEELKEIRQRNLKLTQEELAKRLGTSKSTIERYLKKINEVEEKEKQVDKQVDRVFLVQLMLDYFHNDKNAAEAQRLICEEYGENIVSLSNCERWFNRFDSGDENISKRRVKIDELKAICKENPHLTQVELAERLGTSRSTIKRYLRNIKEEEKEKQVDKQVDRGFLDHELMLDYFHKDGSAKDAQRLICEEYGETIVSLSDCERWFNSFCSDDLDILHVSLRRMEIEELKAMRKANPHLTQVELAERLGISQSSIRDYLKEMREMEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -