Obir010736.1
Basic Information
- Insect
- Ooceraea biroi
- Gene Symbol
- -
- Assembly
- GCA_003672135.1
- Location
- NC:2863581-2867390[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00034 0.35 10.0 0.0 17 41 47 71 45 74 0.91 2 3 0.00034 0.35 10.0 0.0 17 41 157 181 155 184 0.91 3 3 0.00037 0.39 9.8 0.0 17 42 267 292 265 294 0.93
Sequence Information
- Coding Sequence
- ATGGAGAGAATATTGTATCTCTTAGTGACTGTGCGACGCGGTTTGACAGATTTAAATAAGTCAGATGGCTGTGAAGATGTCTCGAATCATAAGATAAAGATCGACGAACTGAAAACATTGCTCGAGAAAGATCCGTACCTATCACAACGAAAGCTTGCACAGCAACTTGGAGTTACTCATTCCTCAGTATggaaatatttgaagaaaatagAAGAAGAGGCAGAAACACAGGAAGTTGATAGACAGGATACAGTTTTCTTTCTCCGACGCATGCATCATCATTTTAATCACGGCAAAAGTGCTGCAGAAGCTCAAGGACTGATTTCTGACAAGTATGGAGAGAATATTGTATCTCTTAGTGACTGTGCGACGCGGTTTGACAGATTTAAGTCAGATAGCTGTGAAGATGTCTCGAATCATAAGATAAAGATCGACGAACTGAAAACATTGCTCGAGAAAGATCCGTACCTATCACAACGAAAGCTTGCACAGCAACTTGGAGTTACTCATTCCTCAGTATggaaatatttgaagaaaatagAAGAAGAGGCAGAAACACAGGAAGTTGATAGACAGGATACAGTTTTCTTTCTCCGACGCATGCATCATCATTTTAATCACGGCAAAAGTGCTGCAGAATCTCAAAGGCGGATTTGTGAAAAGTATGGAGAGAATATTGTATCTCTTAGTGACTGTGCGACGCGGTTTGACAGATTTAAGTCAGATAGCTGTGAAGATGTCTCGAATCATAAGATAAAGATCGACGAACTGAAAACATTGCTCGAGAAAGATCCGTACCTATCACAACGAAAGCTTGCACAGCAACTTGGAGTTAGTCAATCCTCAGTAAGCAGGTATTTGCAGGAAatagaagaggaggaagaaaaacaGGGAGTTAATAAACAGGATACAGTTTTCTTTATCCGACGCATGcatcattattttaatcacgGCAAAAGTGCTGCAGAAGCTCAAGGACTGATTTCTGACAAGTATGGAGAGAATATTGTATCTCTTAGTGACTGTGAGACGTGGTTTAATAGGTTTAAGTCAGGTGATCAAGATATCTCGATACGTAGGATAAAGATCGAAGAATTAAATGTATTGCTCGAGAAAAATACGGACCTTTCAATAATTGAGTTAGCACAACAGCTTCGAATTCATCACATCacattaatcatttatttgagAACAATAAGAAAGAAGAGTGTTGATAAACAGGTCGAGTAA
- Protein Sequence
- MERILYLLVTVRRGLTDLNKSDGCEDVSNHKIKIDELKTLLEKDPYLSQRKLAQQLGVTHSSVWKYLKKIEEEAETQEVDRQDTVFFLRRMHHHFNHGKSAAEAQGLISDKYGENIVSLSDCATRFDRFKSDSCEDVSNHKIKIDELKTLLEKDPYLSQRKLAQQLGVTHSSVWKYLKKIEEEAETQEVDRQDTVFFLRRMHHHFNHGKSAAESQRRICEKYGENIVSLSDCATRFDRFKSDSCEDVSNHKIKIDELKTLLEKDPYLSQRKLAQQLGVSQSSVSRYLQEIEEEEEKQGVNKQDTVFFIRRMHHYFNHGKSAAEAQGLISDKYGENIVSLSDCETWFNRFKSGDQDISIRRIKIEELNVLLEKNTDLSIIELAQQLRIHHITLIIYLRTIRKKSVDKQVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -