Otau010530.1
Basic Information
- Insect
- Onthophagus taurus
- Gene Symbol
- -
- Assembly
- GCA_000648695.2
- Location
- NW:51394-75112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.12 9.2 6.6 0.1 3 21 261 279 259 282 0.88 2 16 0.00068 0.052 13.7 0.3 3 23 334 355 332 355 0.95 3 16 0.12 8.9 6.6 0.0 2 21 363 382 362 383 0.92 4 16 0.00035 0.026 14.6 4.6 1 23 480 503 480 503 0.96 5 16 0.0088 0.67 10.2 2.4 2 23 510 532 509 532 0.95 6 16 0.33 25 5.2 2.9 1 21 626 646 626 647 0.94 7 16 0.00057 0.043 13.9 1.6 2 23 659 681 658 681 0.94 8 16 0.033 2.5 8.4 2.2 1 23 684 707 684 707 0.95 9 16 0.15 11 6.3 2.7 2 23 709 733 709 733 0.94 10 16 0.12 9.1 6.6 0.8 1 23 737 760 737 760 0.96 11 16 0.3 23 5.3 0.4 2 23 767 789 766 789 0.94 12 16 0.043 3.3 8.0 1.0 2 23 798 820 797 820 0.95 13 16 0.0054 0.41 10.8 0.1 3 23 827 848 826 848 0.89 14 16 3.1 2.3e+02 2.2 2.6 2 23 954 976 953 976 0.94 15 16 1.3 1e+02 3.3 0.8 2 23 983 1005 982 1005 0.92 16 16 0.14 10 6.4 0.9 1 23 1018 1040 1018 1040 0.96
Sequence Information
- Coding Sequence
- ATGGAAACGAAACTTTGTCGAATTTGCGGGAAATTAACTGATAACCACTCGGATATTTTCAAAACTGAAGGTTTAAAGGTTAAATTAGAAACATGTTTACCCATAGTGATATCAAAATACAGCCTCCTACCAGACACGATATGCAAGACATGCGTGGAAAACGTAGAATCATTCTAcgacttcataaaaaattgctTACAAAGTATAATAATATTAGAAACTCAATTCGACATTCACGATTCTTGCTTAAAAAGCAAGCGGAAATCCGAAAAAGGTATCTCCGTTGGTTTAACAAACTCAATCGACGTTTCGATTCAAACGGAACCTGAATCTCTCGCCTCGGAACAATTTTCCCAAATCTCTCAAACAATCCAAGCGGCCGAAAGAACCTTGGACGATAACAAAATCCAAAACGAATCTAAAAATTTGGTGAATTACGAGATTTCCGACGATTCTAACCCGGCGTATTCGTCTCCGAGTCATAACAACCTCGATTTCCTCCACAGCTTTTTGATCAACAAACAATACTTTGACAATCACGAGAACAAATTGGTTAACGAGATAACCGAGAAATTAAACGGCAAGAGGAAATGCGACGAAATCCAACCGTATCGggctaaaatttttaaatacgaCGTTAATAATCGTAGGAAAAGTCGCGTTCCGAAAAGAATCGAAGTCCAAAGTTTCGAAGAAAGTTATTCGAGCGGGTGGAACGAGCGAAATGGTGAACATGAAATCACCGATAAgGACGCTTTTTTGGTGAAGTTACCCCAAATTTGTTTGTTATGCGAacaacaatttgaaaatgctTCGCTTTTGGCAACTCACGTTTTTGATACTCATGGAATTGATATGGCGCAAGTTATTGGGGGCGAAACCACGGTTGaaaggaagaagaaattgccGGATTTAGTGAAAATAGCCGATTTGAAAAGTAataaaagtgatttaaaagattttgaatACGAAGAATCTCAACAATCGGAGAATCATTTATGCTCGATTTGCTCATTAGCGTTTCCAAATCAACAAGATCTTTACGCCCACATCCAATCGTTGCACGCAAAAGATTCCTCCTCGTTAATTTGTGGGTTATgttctaacatttttaactcCCACGCAAATTTAGCGTCTCATATCGAAATTTGCCGCACGAAACATTCGATAGAAACCCGCTACATCTGCACGGTGTGTTCTTTTAATGATGATAACATCAAAACGATCGAGAATCACATCGCCGGGCACGAATCCCTATTGGAATATTGCAAAAAGAACCGCAAAATCTTCGATCCCAACGATTACgtcgaaattaataattattttaataactcgATTAAAACGTATGTATGTGGGGAATGCAACGAAGATGGAAAGATGGGAAATTTCGATAGTTTTAAGGAATTTAGCGCGCATAGGAGATGTCAACATCAAATATTTCACTGCgatttatgtaataaattttatgggAGGAATTCGCATCTTTGGAAACACGTTAATAGGCTCCATAAAGGGCATCCTAGCGTAACTTGTTTgctttgtaacaaaacgagcGCTTCGAAATATCATTTATCGcaacatttcaataaaattcattcTGCGAAGAATTACgggaaaaattttaacaaaatcgaGGTGAATTCGAGCGActcaaacgattttttaaagaagaaattcgAAGGATTCGATTTCCAATCGGTTAAACAAAGCTTTTTGAAGCAAGAATTATTGGAGCAACAACAATTGTTAGTGATGAgcgatgatgatgaagaaaatgaGATAATCGACGATGATTTACCGAAAGAAGTCGATATTTCTAGTAATTTGTATACAAATATAATCACGAattacacccctccaaaaaatGAGGGCGAATATAAATGCTCGAAATGTTTTCGCGGATTTTTgcgaaaaaatgtattaaaaaaacataaaaaaaattgccgCCCTAAGAACCAAAAGGATTTATTAACTCGCTGTAAAACGTGTACTAGGATTTTCAAAGATCGACAAAGCCTCGcgaaacatttaattaattaccacACGGATTACGATTGCGAAATTTgccaacaaaaatttcaaagcaAATGCGAGATCGTCTCGCACATCCGATTTTCACACCCTAAGTGTaaactttattgttattgCGGAAGCATTTTAAGAAACTCATCGGAATTAAACACCCACAAAAAAGATCACCGAAACTCCTTTATTTGCCACTTTTGCGGGGACAACCTCCCAACTAAAATTAAGCTAAAAATGCACATCTTAAGTTTACACCGAAAAATTTTAAGCTTAAGTTGCGGGATTTGCCTCAAATTATTCGAAACTCAACACATTTTACGCGACCACGTAAGATTAGCCCATAAAGAACGCTTAAAACCTTTAACATCATGCACAGTTTGCGGGAAAAATTACGGATCGAAATGGAAAACTTTCgatcatttaaataaatcacacGGAAGGATTTTTAGACCTTGTCGAATTTGCTTAGAAGTTTTTAACAACGAATCGGAACTCCAAAATCATTACGATTTCATTCACAGCgagtcaaaaaataaatcaaccgGGAAAAACGAAAAcgataacgaaaataatgaagaaatcgatttaatttctgataaaaaaatcatcgaaatcGATCAAAACGATGcgaataaaaaggaaattgaagatgatgatgaagaagacGTAAAAATGTCGCTGTTGGAGAAACGATTAACATCGGGGAAAAAAACcgtttcgaataaaaataaaaacgataagaAGGATGAGGAAATTGCGAAAAGTTATGGGGTCGAAGAGGGGTTTCAAAATACCTCAAAAAGAACGGTTTACGTTAATAGCGATGTCCCGTCGAGGTGcgaaatttgtttgaaaacttGGCCCGCCAAAAAACATCTTTGGCAACATTATATTCGgTGTCACAAATCAGTAGCAGCAACAGTTTGCGGAATTTGTTTAAAAGCAAACGATTCCTACACAACGCTACAACACCACCTCCGCGAAAACCACCCAACATTACTTCACGGTCAAGGTTTCGGCTCAAACTTTATTTGCCGAATTTGCGGCCGATACCACAACGCcagttcaaaattaaaactacacATGGCAATTCACGAAAATTTCGATTGGAAAATACTCGAACAATTCGAAAATAAAGACGAAAacgacgaagaagaagaagaaaacaaaatcgaaaaagaattatccgaagaagaagaggaggaagaagaaaaatccgaaattaattacgaaaatttaatCGAAGAAGTCGAATGTAGCTCGGAATCGGAAGACGAAGATTCCGATTCATCAAGCGATGACTCCGACGATGAAGACGACGAAATAGACGATAATGACGAAATTGACGAAGAAATCTCCGAAGAGAATTCGTTAGAATCTCAAATGCTACAAAATATGTTGCAGGAAAAAGGAATGTTGGAGGTTAAcgtttataataaagaaaaaaacgatAAAGATGTTAAAATCGAGGTTTCATCCGAAAGCGATAGTTCAAATTCGAGttataaagttgaaaatgtaataaaatcgGATGTCTCATCGTTGAACGGTGAAGATTATCAAGATATTAAGATGAACTATCGATTGTTATCGGACGATGATGAAATCGATGATTCTCGaactgaaattaaaacggaacAAGAATTAAACTCGGCGATTCAATCGATTTGTTACGACGATGACGACGAAGATGACGAGGAGGAACACGAAGTCGTTATCGATCATGATTATTCAGAACTTCCGATGCATTCACTTAATAATCATGAAATTCAAACTGCCGTTGATAGTATTCTAtaa
- Protein Sequence
- METKLCRICGKLTDNHSDIFKTEGLKVKLETCLPIVISKYSLLPDTICKTCVENVESFYDFIKNCLQSIIILETQFDIHDSCLKSKRKSEKGISVGLTNSIDVSIQTEPESLASEQFSQISQTIQAAERTLDDNKIQNESKNLVNYEISDDSNPAYSSPSHNNLDFLHSFLINKQYFDNHENKLVNEITEKLNGKRKCDEIQPYRAKIFKYDVNNRRKSRVPKRIEVQSFEESYSSGWNERNGEHEITDKDAFLVKLPQICLLCEQQFENASLLATHVFDTHGIDMAQVIGGETTVERKKKLPDLVKIADLKSNKSDLKDFEYEESQQSENHLCSICSLAFPNQQDLYAHIQSLHAKDSSSLICGLCSNIFNSHANLASHIEICRTKHSIETRYICTVCSFNDDNIKTIENHIAGHESLLEYCKKNRKIFDPNDYVEINNYFNNSIKTYVCGECNEDGKMGNFDSFKEFSAHRRCQHQIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSVTCLLCNKTSASKYHLSQHFNKIHSAKNYGKNFNKIEVNSSDSNDFLKKKFEGFDFQSVKQSFLKQELLEQQQLLVMSDDDEENEIIDDDLPKEVDISSNLYTNIITNYTPPKNEGEYKCSKCFRGFLRKNVLKKHKKNCRPKNQKDLLTRCKTCTRIFKDRQSLAKHLINYHTDYDCEICQQKFQSKCEIVSHIRFSHPKCKLYCYCGSILRNSSELNTHKKDHRNSFICHFCGDNLPTKIKLKMHILSLHRKILSLSCGICLKLFETQHILRDHVRLAHKERLKPLTSCTVCGKNYGSKWKTFDHLNKSHGRIFRPCRICLEVFNNESELQNHYDFIHSESKNKSTGKNENDNENNEEIDLISDKKIIEIDQNDANKKEIEDDDEEDVKMSLLEKRLTSGKKTVSNKNKNDKKDEEIAKSYGVEEGFQNTSKRTVYVNSDVPSRCEICLKTWPAKKHLWQHYIRCHKSVAATVCGICLKANDSYTTLQHHLRENHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWKILEQFENKDENDEEEEENKIEKELSEEEEEEEEKSEINYENLIEEVECSSESEDEDSDSSSDDSDDEDDEIDDNDEIDEEISEENSLESQMLQNMLQEKGMLEVNVYNKEKNDKDVKIEVSSESDSSNSSYKVENVIKSDVSSLNGEDYQDIKMNYRLLSDDDEIDDSRTEIKTEQELNSAIQSICYDDDDEDDEEEHEVVIDHDYSELPMHSLNNHEIQTAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098009;
- 90% Identity
- iTF_01098009;
- 80% Identity
- -