Otau011360.1
Basic Information
- Insect
- Onthophagus taurus
- Gene Symbol
- prdm10
- Assembly
- GCA_000648695.2
- Location
- NW:526122-532893[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00018 0.013 15.5 0.1 2 23 415 436 414 436 0.95 2 12 0.0049 0.37 11.0 1.1 1 23 480 502 480 502 0.95 3 12 0.00076 0.058 13.5 0.4 1 23 507 530 507 530 0.96 4 12 0.006 0.46 10.7 0.5 1 23 541 563 541 563 0.96 5 12 1.4e-05 0.001 19.0 0.8 2 23 572 593 571 593 0.97 6 12 0.00038 0.029 14.5 0.3 1 23 600 622 600 622 0.97 7 12 0.004 0.31 11.2 2.3 1 23 628 651 628 651 0.96 8 12 0.0019 0.14 12.3 4.2 1 23 656 678 656 678 0.96 9 12 0.0023 0.17 12.0 4.5 3 23 686 707 684 707 0.89 10 12 0.0079 0.6 10.3 1.8 1 23 732 755 732 755 0.97 11 12 8.5e-05 0.0064 16.5 2.3 1 23 777 800 777 800 0.96 12 12 0.0047 0.35 11.0 3.8 1 23 835 858 835 858 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGCGTTATTGATGGATCCGGACGTGAAGCCGTTTCTTTGGCAGTAAATGGTATGTCTTTGGATACATCTTGGAGTTCGCAAGATGCCAACAATCAAAATGTCTTGTATATCGTTAGTTATGTTAAAGATAACGAATTTAAAGTGGACTCAGAAAGTGAAGTTCAACAAAATTTCACAGAATTTGATCAGCATGTTAGCCCATTGGATCCAAATATGTGTTCTGTGGCGCAATACAGCCCAGTTTATAGCTCGGAAAATTCCATATCTTATAATAACCCAATAGTTTTGGTTACCAACAATGAATCTCAAGAAATTCTTTCTATACCCAATAATGGTCAGATTGTTGAAACTGAATTACTCATAAATGAATCTGTTGATGATCCTGATGCGCAGACTGTAGTGGAAGATGTTGGAAATGAACAAGAAGTTGAGTTATTAATAACAGATCAGAATACAGGGATCCAATACACAGTTACTAAAGAGTATTTAGTAGAAAGATGTTTAGCTGATGATCAACATTTACTAGAAAATTTAGCGCCTGATACTTTATTAGATTCCGAGCTTTTAGCTTTAGATGATAACGttttaaaatcacaattttCTGAAATTGTAGTTGAACCGACTCAATTATTGAACGGTTTAGTTaaggttaataaaaatggaaacaaAATAGATGATTCACATGAATtagataaaatgaaaaatgacgATGAATGTAGAAGATTCTTAAGAAGAACCGATTGTTGTCCCGATCCAGAACAAGAAATGTTATGTTGCGTGCGTCCAATTTCAGATAAACCAGTTCCAACGCGAGCTTGGGCCACCCTCCCAGAACCATATTTAATCATCCAAAACATTTCTGAAACCGAAGTCGGcgtttttgctaaaaaaacCATTCCTAAATTAACCCAATTTGGTCCTTTAGAGGGGACATACATCGAATCAAACAACATTAGCGATTGCGGAATAGAATTTTTCGTTCAAAATCAACTAAATCAAGTTctaaaaattgacgtttctgATGAAAACAATTCGAATTGGATGCGGTTTGTTCGACCGGCTGTAACATTTAAAGAACAAAACTTGGTTCTCGTCGAGAACGAATCTTTGTTATATTTCGTTAATTACGATCCAATTTTACCTAAACACGAGTTGAGAGTTGGTTATAGTAAATCGTATGCGCGAAAATACAATTTGAAGGTTTTACCACAAACGGTCGATGAGACGAATTTATGGCCCTGTTATGAGTGTACAGAAAAGTTTACTTCTTCGGAACTTTTACAGAATCATTTAGATGTGCATGATgataaagttgatattaaaattaaaaagaaacggaaaaaaattgttcagaagaaagaaaaagatgttttggGTTGTAGTGATGGTGTCAAGGTTgatgataaagaaaaacataatatagtaagatcttTCAAGTGTCGccaatgtaaattaattttcgaaacaGAAGATGCATTAAAAACCCATTCCTCCCAACATTTACAAAACAATCATATTTGCGAGGTTTGCGGAATGTCGTTCGGTTCAGTATCCCAACTTGATTACCACTTAAACATGAAACACGCAACATCAAAGAAAAGCGGTAAAAAATCGTTTGATTGCGTGCTTTGTAGCAAAAGTTTTGCCACAATCGAACGGCGTCAAAAACACATGTTGGTTCATGGATCCGAAGAATCGAAACCTTTGCAATGCGATAAATGCAGTCGgcgttttattaataacagcGCGTTAGCGTATCATTTAAAAACTCACATTGTTGGTAGAAAACAGTTTGAGTGTCCAATTTGTAAGGAGACGTTTGTTTATGTGTTACAATTAAAGTTGCATGTTAAACAGCATTGTATTGATGGTCAATACACTTGTCCgcattgtcaaaaattatttactaaataCAGTATTATCAGGAAACATATTAGAGCTTTGCATTGTGAACGAAAGCATGCGTGTCAACAGTGTTCGAAACATTTTCCAACGCTTGATAAATTACGCATGCATCTATTGAAACATTCAGATCATCGAGAATTTGGTTGTGCTGAATGTGGGAAGCATTTTAAAcgtaaagataaattaaaagaacacTGTCAACGGATACACTCGGAGGAGCGGGAAAATGCAGCCCCAaaatttgttccaaaagttgaACCAACCGATTATCACcgatttatttacaaatgtcACACTTGTATGGTTGGATTTAAGCGACGTGGAATGTTAGTTAATCATTTGGCAAAACGACATCCGGATATTAGTCCAAATTCTGTACCTGAATTAAATCTCCCAATTTTAAGAGCCACAAGAGATTATTTTTGTCAATACTGcgataaagtttataaaagtTCGAGTAAAAGGAAAGCTCATATCTTGAAAAATCATCCTGGTGCTGCTTTACCTTTAAGCAATAAAACTCATTCATCTACAGCAGATTTACCAAATCCTACTTTTTCACAAACAGTGGGTAGTGTAACAACTCACCCTCATTCTTGCgagttttgttataaacaatatgCTAGTAAGGCAAAGTTGTTGCAACATTTACGAAAGAAACATCtagatttaatacaaaatgtaGCACAAAATGAATCGAAAGAGATTCGAAACGATGAAGGGGAAGTCGAGAAAGTTCTTGACGATGAGATTTTAACACATCTTGGTGCTGATTATCAATTAGTGTCAATTGAGGAGTTTCCACAAGGGGAATCGGATTCGAGGTTGTATCGACTATTGACTACTACAAACAATATGGTACCACCACGttga
- Protein Sequence
- MESVIDGSGREAVSLAVNGMSLDTSWSSQDANNQNVLYIVSYVKDNEFKVDSESEVQQNFTEFDQHVSPLDPNMCSVAQYSPVYSSENSISYNNPIVLVTNNESQEILSIPNNGQIVETELLINESVDDPDAQTVVEDVGNEQEVELLITDQNTGIQYTVTKEYLVERCLADDQHLLENLAPDTLLDSELLALDDNVLKSQFSEIVVEPTQLLNGLVKVNKNGNKIDDSHELDKMKNDDECRRFLRRTDCCPDPEQEMLCCVRPISDKPVPTRAWATLPEPYLIIQNISETEVGVFAKKTIPKLTQFGPLEGTYIESNNISDCGIEFFVQNQLNQVLKIDVSDENNSNWMRFVRPAVTFKEQNLVLVENESLLYFVNYDPILPKHELRVGYSKSYARKYNLKVLPQTVDETNLWPCYECTEKFTSSELLQNHLDVHDDKVDIKIKKKRKKIVQKKEKDVLGCSDGVKVDDKEKHNIVRSFKCRQCKLIFETEDALKTHSSQHLQNNHICEVCGMSFGSVSQLDYHLNMKHATSKKSGKKSFDCVLCSKSFATIERRQKHMLVHGSEESKPLQCDKCSRRFINNSALAYHLKTHIVGRKQFECPICKETFVYVLQLKLHVKQHCIDGQYTCPHCQKLFTKYSIIRKHIRALHCERKHACQQCSKHFPTLDKLRMHLLKHSDHREFGCAECGKHFKRKDKLKEHCQRIHSEERENAAPKFVPKVEPTDYHRFIYKCHTCMVGFKRRGMLVNHLAKRHPDISPNSVPELNLPILRATRDYFCQYCDKVYKSSSKRKAHILKNHPGAALPLSNKTHSSTADLPNPTFSQTVGSVTTHPHSCEFCYKQYASKAKLLQHLRKKHLDLIQNVAQNESKEIRNDEGEVEKVLDDEILTHLGADYQLVSIEEFPQGESDSRLYRLLTTTNNMVPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01097860;
- 90% Identity
- iTF_01097860;
- 80% Identity
- -