Otau008381.1
Basic Information
- Insect
- Onthophagus taurus
- Gene Symbol
- -
- Assembly
- GCA_000648695.2
- Location
- NW:837912-849001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-06 0.00021 21.2 0.2 3 23 109 130 107 130 0.96 2 13 0.022 1.7 8.9 0.7 1 23 144 167 144 167 0.91 3 13 3.8e-07 2.9e-05 23.9 3.0 1 23 173 195 173 195 0.99 4 13 0.00096 0.073 13.2 1.3 1 15 201 215 201 218 0.85 5 13 0.0023 0.18 12.0 3.3 2 21 268 287 267 288 0.92 6 13 0.0069 0.52 10.5 0.4 2 23 296 318 295 318 0.93 7 13 0.00052 0.04 14.0 0.2 1 23 325 347 325 347 0.97 8 13 2.1e-05 0.0016 18.4 3.0 1 23 353 376 353 376 0.95 9 13 0.00012 0.009 16.1 2.5 1 22 381 402 381 403 0.90 10 13 3.7e-06 0.00028 20.8 1.0 1 23 412 434 412 434 0.97 11 13 7e-06 0.00053 19.9 0.1 1 23 442 464 442 464 0.97 12 13 0.00089 0.068 13.3 4.6 1 23 470 492 470 492 0.98 13 13 8.2e-07 6.2e-05 22.9 0.3 1 23 498 520 498 520 0.97
Sequence Information
- Coding Sequence
- ATGGCTGTAGCTATCAAAACCGAAATTGTGTCTTTGTTGAATTTAGCAATAAGGTTAAGCTGGGCTTACACAGATCCACTCGAAGTTAAATACATATGTGAGGGAGGAATTAAATTGGAGTACGATGAGAAAGAATATGATGAAAAAGAGGTTGATGCAAAAGAGTATAATGTtacaattgaaaataaattcatagtaaatgaaacattaattaaaccaCCTTTACAAACAAGTAGTATTCTTAGAACACTTCTTAGTGGTAGAAGTTCTCAACAAGTGAAAGTCGAATGTCCAGAACAACAAGAAACTAGTTCTTCAGTTATTTGCGTAGTttgtaagaaatcttttacGGATCCTTGGGctttaagaacacatcagcGTCGCTCGCATAAAGTTACAACAGATggtaaagaaaagaaaaatagaactTATTTATGTGAAGTGTGTGGGAAAGCATGTACGGGAAAATTAACACTTGATGATCATTACAATTTTGTTCACACTGGTACAAGACCTTACACGTGTCCTCATTGTCCAAAAAGTTTTGCAACGCATAAATATTTGGTAATTCATCAACGAATTCATTCGGGGGAGAAACCTTATGCTTGCAAACATTGCGGGAAAAGTTTCACCCAACGATgTCCTCTCCagatcaaaaatttcaaccaAGGACTTGTACCAGTTGTAATAGATCGTATACAACGCAATCATCATTTAAAACCCACAAATACAGATGTCCAGCTAACCCACTTATTACAAAGgacaaatttaaaacaaaaagaagatGTGGTTAAAAATACAAGTTGTAACCGttgtaataaaagttattctaCACGAAGAGCCTACACGAAACATCGACAcagatgtaataaaattaaaagtatacCCTGTAATATAtgcgaaaaattatttaaaacgtttcaaGAAAGAAATCGCCATGTGAAAGCATTACACAATGAAAATAGAAACGTTTATGCATGCGATATTTGCGACGAGTTCTTTTTAACTACATCAGCATTAGAACGTCATGAAAACAAACATCTCAACAAACACAAATTTCAATGCGATGAATGCGGTAAAAAATTTCACATAAAATCAAGTTTAAATCATCACATCGCTTTACAACACAAAGGTGTTAGATATACTTGCGAAGAGTGCGGAAAATCGTTTGCTAGCGAACCTTATTTTCGCAAACATTGCGTTACACACAAAGAAGATTATGTACCACCTAACTTTCATTGTTTGGAGTGCggtaaaatttataacagaaAAAGTTCTCTTGCCATGCACATACAAATACATAGGGATCctagcaaaaaatttttcgtttgcGAAGTTTGTGGTAAATCCGTCGCTTCGAAAACTAGTTTAAAACAACACGTTATGTTACATACAGGAGAAAAACCATTTAAGTGCGATGTGTGTGGAAAATcgtttaataaacaaacaatttgTAAAAGTCATATGAGAACGCACACAAAGAGTAAAccatttatttgtaatatatGTGGTAAAGGATTTTCTCAAAGAACGCCTTTAACTGTTCATTTAAGGTATCATTCGGGCGAGAAACCGTTTACTTGTTTAgaggcTCAATTATTAactcaataa
- Protein Sequence
- MAVAIKTEIVSLLNLAIRLSWAYTDPLEVKYICEGGIKLEYDEKEYDEKEVDAKEYNVTIENKFIVNETLIKPPLQTSSILRTLLSGRSSQQVKVECPEQQETSSSVICVVCKKSFTDPWALRTHQRRSHKVTTDGKEKKNRTYLCEVCGKACTGKLTLDDHYNFVHTGTRPYTCPHCPKSFATHKYLVIHQRIHSGEKPYACKHCGKSFTQRCPLQIKNFNQGLVPVVIDRIQRNHHLKPTNTDVQLTHLLQRTNLKQKEDVVKNTSCNRCNKSYSTRRAYTKHRHRCNKIKSIPCNICEKLFKTFQERNRHVKALHNENRNVYACDICDEFFLTTSALERHENKHLNKHKFQCDECGKKFHIKSSLNHHIALQHKGVRYTCEECGKSFASEPYFRKHCVTHKEDYVPPNFHCLECGKIYNRKSSLAMHIQIHRDPSKKFFVCEVCGKSVASKTSLKQHVMLHTGEKPFKCDVCGKSFNKQTICKSHMRTHTKSKPFICNICGKGFSQRTPLTVHLRYHSGEKPFTCLEAQLLTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -