Otau005452.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Onthophagus taurus
Gene Symbol
Snai1
Assembly
GCA_000648695.2
Location
NW:872645-885855[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00024 0.018 15.1 0.1 1 23 312 334 312 334 0.95
2 12 2.1e-05 0.0016 18.4 1.6 1 23 342 364 342 364 0.99
3 12 1.3e-05 0.001 19.1 0.4 2 23 372 393 371 393 0.97
4 12 3.1e-06 0.00024 21.0 0.9 1 23 399 421 399 421 0.98
5 12 5.7e-05 0.0043 17.1 2.4 1 23 428 450 428 450 0.99
6 12 0.0013 0.099 12.8 1.4 1 23 456 478 456 478 0.96
7 12 1e-05 0.00079 19.4 0.1 1 23 484 506 484 506 0.98
8 12 2.3e-07 1.7e-05 24.6 0.8 1 23 512 535 512 535 0.96
9 12 8.9e-06 0.00068 19.6 0.5 1 23 541 564 541 564 0.95
10 12 3.8e-06 0.00029 20.8 2.1 1 23 570 592 570 592 0.99
11 12 6.5e-05 0.0049 16.9 0.4 1 23 598 620 598 620 0.94
12 12 0.0013 0.099 12.8 0.3 1 23 626 650 626 650 0.93

Sequence Information

Coding Sequence
ATGTGTTCTAAAGAGGCCCAGGATAACTCATTTTGTTTAGTATGTAGTGGGCGAGTTGGAGTATCAACAAGAAATgctataaacatttttggaaaTGAGgttatcaCCTGTTCAAATCGTCCGTTAAACTTTGTAATATCACAAATATTAGGAATAGATATTCAAGAAAATACAGTACACTCGCTcataatatgtaaaaaatgttttaaacttgTCAATGAAGTAGATGAATTAGAGCAAAGGTTATTAGAAATCAAATTGGAATTAtccaataattataaaaaatcgtttgagAAAAGTAGACTTGGAGAGGACGACTcggatgaaattataaatcaaaataatatggaattgaaaaaCGATGGAACGGCGGAAAATAATGTtccgaaaaaaatattagatatACCATCCTCGGATGATGAGGATGGTGATGAAAAGTTGAATCGAAAAGATAATTTGCACACCCTTGAAGATATTGAAATGGAATTGGTTAAAATTCATGGTGATGTTGGGAAAGATGTGttatcaaaacatgataaCAGTGATGGTCAACAATTTGCGGAATTTCAACATGATGTCATAGATAATAATACTGAAAATCGTACTGACTCGGACCTCGATGCTGATGATCATGATAATGGTGAGCTTTTATTGGGGACATCACAAGTTAATGAAAATACTTTgaaagatGTTCacgttaaagttgaaatgGGTGAAAACGACGAAAAaccaaatatcttaaaaaggAAATCACCACCTCCCGGTAGCATAAAAAAAccgctaaataaaaaaattaaagaagagaCTCTTCCACCTATTGTTGGAAGAGATGGTAACATGTACACATGTTTGTTATGTGAAGGAGAAGAAACAGTTTGTGGCGAAGCAAAAGCAATAATGCAACATATGAAATTGATCCACGACGCCCGATTATATATTTGCGACGTTTGTGGTGAGGATTTCCGGAAAAGAAACGAACTTTCCGTACATTTAGATGAGCATGTCGCCACTGAAGAAGGCGATTTTCAATGCGAAGTTTGTAATagaatttttagtaatttaagattatttcgAATACACAAAAGAATGCATTATCCCCAAAATAAAGCATGGACTTGTGAAACTTGCGGCAAAAGATATagttctaaaaatttattagacgAACACATAAATACACACACAGGTATTCGACCTtatatttgtcaactttgtGGTAAAGATTTCGCATCGAAATATACATTTAAAGCTCACGTAAAAACACACGAGGTTCGTCCGAGACCATTTCAATGTTTACAAtgtaataaatcgtttttaagcCAACAAAATTTAACGCAGCACGAACGGACGCATTCGGGCGTTAAAGAATATTCCTGTCACCTTTGCGATAAACTGTTTGGTTCCGTGCATAATTTAGAAGTCCATTCGATCGTTCACACCAATCACAAACCGTTTATTTGCGGTCAATGCGGAAAAGCGTTCGCTCGAAAAGCGGAAATTAAAGATCACGAAAGAACGCATACCGGCGAACGGCCGTATCAGTGCGAAATGTGCGGCGCCACTTTCAGCCAAAGATCAAATTTACAATCACACAAAAGAGCTACTCATTATGACGATAAAAGATATAAATGTGAGGATTGCGGAAAAGGATTTAAAAGGCGACGATTATTGGATTATCACGTAAAGGCGGTTCATACAGGGGAAAGACCGTTTAAGTGTGATGTTTGCGACGCAACTTTTGTTTATCCTGAACATTTTAAGAAACACAGAAGGATTCATACAGGTGAAAAACCGTATTTGTGTGAAGTGTGCGGAAAAGCGTTCAATAGTCGTGATAATCGCAACGCGCATAGATTTGTTCATTCGGATAAGAAACCATATGAGTGTTTAGTATGCGGAGCTGGATTTATGAGAAAACCTTTACTGTATCAACACATGCACACTCAAGGACATTTAAATGATACCATTGTGGTTAATCAACCCAGGTTAACAACTGATGATGATCAAATTATTACCGTTAACGCAGATGGTGAAATGGAAATTGTTGAAGGTGATGTAAGTAGATTTGAAAATGTTCACGAAGCTGATGAAGATTCAAAACTTTACATAGCCGACTTAAAATCGCATATGTTAGTTGATGGAAAAGTGTTTGAACATGCAGATGGTTCCTTAATTGTTGGTGAACATTTAGAAGAAGATCAACTTGAAGAATCGGAAGCTGTTGAACATATTATTATAGATGGACAACAAATACAATTTGCTGATGAAGATGGTGAACCTGAAGAAGATATGGAAGAAATGGATGAAAGTGAAGGTGATCACGTTTTGTCCTCGTCAAATGATTATGAAAGAATTATAACCAGCGCGACTTTGGCAAATGGAGAAACACAAATTATTCAAACTAAGGAAGGTCCGGTTCAATTTGTGCAAGTACGTATACCTAATGATAATGGAGAAGAGGAAGATGCTTGGTTAAAAATCGttactaattaa
Protein Sequence
MCSKEAQDNSFCLVCSGRVGVSTRNAINIFGNEVITCSNRPLNFVISQILGIDIQENTVHSLIICKKCFKLVNEVDELEQRLLEIKLELSNNYKKSFEKSRLGEDDSDEIINQNNMELKNDGTAENNVPKKILDIPSSDDEDGDEKLNRKDNLHTLEDIEMELVKIHGDVGKDVLSKHDNSDGQQFAEFQHDVIDNNTENRTDSDLDADDHDNGELLLGTSQVNENTLKDVHVKVEMGENDEKPNILKRKSPPPGSIKKPLNKKIKEETLPPIVGRDGNMYTCLLCEGEETVCGEAKAIMQHMKLIHDARLYICDVCGEDFRKRNELSVHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCETCGKRYSSKNLLDEHINTHTGIRPYICQLCGKDFASKYTFKAHVKTHEVRPRPFQCLQCNKSFLSQQNLTQHERTHSGVKEYSCHLCDKLFGSVHNLEVHSIVHTNHKPFICGQCGKAFARKAEIKDHERTHTGERPYQCEMCGATFSQRSNLQSHKRATHYDDKRYKCEDCGKGFKRRRLLDYHVKAVHTGERPFKCDVCDATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMHTQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVEGDVSRFENVHEADEDSKLYIADLKSHMLVDGKVFEHADGSLIVGEHLEEDQLEESEAVEHIIIDGQQIQFADEDGEPEEDMEEMDESEGDHVLSSSNDYERIITSATLANGETQIIQTKEGPVQFVQVRIPNDNGEEEDAWLKIVTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01097802;
90% Identity
iTF_01097802;
80% Identity
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