Osag041525.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- ZIPIC_1
- Assembly
- GCA_036711965.1
- Location
- JASERS010000010.1:3063656-3072767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.22 28 6.9 0.1 2 23 7 28 6 28 0.96 2 15 0.21 26 7.0 3.2 1 23 403 426 403 426 0.89 3 15 0.0041 0.51 12.3 0.1 3 23 476 497 474 497 0.92 4 15 0.017 2.1 10.4 0.5 2 23 506 527 505 527 0.98 5 15 0.00018 0.022 16.6 2.4 2 23 530 551 529 551 0.97 6 15 0.31 39 6.4 1.5 1 10 557 566 557 579 0.82 7 15 4.2e-05 0.0052 18.6 5.6 2 23 586 607 585 608 0.95 8 15 0.21 26 6.9 0.2 6 23 622 639 621 639 0.97 9 15 0.00081 0.1 14.6 1.4 3 23 646 667 645 667 0.97 10 15 0.099 12 8.0 0.1 2 23 683 703 682 703 0.97 11 15 3.8e-05 0.0047 18.7 1.7 1 20 709 728 709 731 0.92 12 15 2.9e-05 0.0035 19.1 0.5 1 23 739 761 739 761 0.99 13 15 0.00043 0.053 15.4 3.5 1 23 767 789 767 789 0.98 14 15 5.8e-06 0.00071 21.3 4.8 1 23 795 817 795 817 0.97 15 15 0.0013 0.16 13.9 5.6 1 23 823 845 823 846 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAGCAGAACGTTGTTTGTCCGGTTTGTACTTTGTTTTTACGTCCTGGGATTAATTTGAAACAACATTTAAGTACACATCCGAAACAAAAAGTTATCGAGGCATTGATTAATTTGGCTGGGATCGAGAGTAATCATGAAAATAAACCGTCAGGAAGTTCTGAGACGAATAATACAACCGTTCCTGGTGGAAGTAACACTCAGAATGGGTGGTTTCCTTCGTCTTCTCCCTCGAATGCTGTTTATACGAATTTTGGAAATCTTTCGGGTGGAAATCATTCCTTCATTTACCAACAGTTCATGTCATCGACGACACCTCAAGTTCCTTTAACACAACAAATAGTTACAGTTCCGACGTTATTAAATTCGCAAATGATGTGCCCCCCTTACGTTTATCAACAGCAACAAGTGATAATGTCAGGTCCATCATCGGTGATGTTACCTAAACATCTTCCGATTGAATGTGGTGAAAAAATGATTACGGAAGAAGTCTCAGATATCGAAGAATTAGTTGAGGAGGAGGGTTTAATTAATTCCGAAGAGGAAGAGGTAAAAAAGCTGGAATCGGAAGAAAACTGCGCTGAGGAATTAAAGATTGAAGAAACCAACGTTACGATTGCTTTAAAAATAACCGAAATGGAAGAATTAGATAAATCGTGTCAAACGCAAAGCTTTGAGAATCAGCAGATTGAGAATATCGAGGAAGAAGAGGTTAATTACGCGATTTTAACGAATTACGAGTCAAATTTGGGGACTGAAACGGAGACGATTCGACAAGAAAACGTCGATATGGATGGGATGCCATTgtttattaacgattttaatgCCCCGGTTACAGTGGCGAGGGTCGAGGAGTTTGATATATCAACAAACGATCATCGCCCGAGAGTTTTAATGAACATTGGGAACACAATCGAGACATTTACAGTGAATCGGGATGAGAGTTTATCGAGAGAAAGCGCCAACATCCGCGCCGATGAGCACATGCCTCCGAGGGGGGAATTATCAGGACAAGAAAGCAACGATACAAGCGAAAATTGGGTCCAACCCCCACCGCGGTATGATAACCTCTCAGTTTCTTACGATTTAATCGGTTTAAACTCAGAAATTACCTCTGAAAATAACGAAGTTAATGAGGTAAATGTAAACGAGGTTTTTGATGATACCCCAACAGTTTCGGGGTTCCGAGAACCCCCAATTAGTTATAAATGCCCGAGTTGTAACGAGACGTTTAGTTGCccgaaagaaagaaagaaacacCAAGGCGAgaaacacaaaaaaatcaaaaagcgCCCCAAAAAATCCGACGAAAACAACTTCGATAACGTTTTTAACCGATTCAAAATCGAACCGGAAATCGACAACATTGAATCAGAAACTAAAGATAACGATAAAAAAGAAGTTCTAATTAACCCGATAATTTGCACATTGTGCGATCGAGTCCTCGCAGATTCTAACTCATTAAAACAACATCAATTAGACGAGCACCAACTAACAGTCGAAGTTAGGAATAAATGCAAAACTTGCGAGGCTACATTCCCCACCGACGCAAAATACACAGAACACTTAAAAATACACCCCTTAGAATGCCGATTATGCGGAAAATActttttccgaaaacaaaacatGCAATTACACATGAAACGCCATCTCGGCATCAAACCATTTAAATGCAACATATGCGAAAAATCATTCTTAACGAAACAAAAACACGACGAACACAAAAACATCCACACGGGGGAAACCCCCATTAAATGTAAATTATGCGACGAGACGTTTCGGAGGCACTCAAACTTGGTGCAACACCGCAATCGGCATCATTTTAACgttaaaaggaaattaaaagaTTACGTTTGTGCTTGCGGCGAGGTTTTTCACTCAAAACGGAAATTAGCCTGGCACAAAGAAATCCACGACACGAAACCGAAAGCTTGTAGTTTTTGTTCAGAAAAGTTTATTCACATGGCTAGTTTAACGAGACATATTCGACGCGCCCATAACAAATGTTATTTGCCTCGCGAGGATCGTAATTCGGAAAACGTGGAATGTCCAATTTGTAAAAACGTTTATCTCCGGAACAATTTAGACGTTCACATACGAAGTCATAGCGGTCAAAAACCGTTTACttgtttaatttgtaataaaacgTTCTCGACGAAATGGAACTTAAAGCTGCATAAGTGGACTCATGCGTCGAGAATGTCGAAGCCGTTTAAATGTGAGTTATGTAAGGGAGCTTTTATAAGACAATCTGATTATACGGCCCATATGAATTCGCATAAAAGTGTTAAGCCGTATACTTGTAATTATTGCGGGGCGCAGTTTATTAGAAAATATAATTGTCAAAGACACGTTAGGGAACATGAGAAGGATAAAACGCATTCGTGTAATATTTGCGGGAAAACGTTCCATCGTTCTTATTATTTAAAGGATCATATTAAGGTTCATTCGGGGGTTCGGCCATATATTTGTCATATTTGTGGGAAAGGATCAACGACGAAATCGAATCATAACAAACACGTTCGAATTCATCACGCACGGGAACCGGTCAGTGCGGAAAattga
- Protein Sequence
- MEQQNVVCPVCTLFLRPGINLKQHLSTHPKQKVIEALINLAGIESNHENKPSGSSETNNTTVPGGSNTQNGWFPSSSPSNAVYTNFGNLSGGNHSFIYQQFMSSTTPQVPLTQQIVTVPTLLNSQMMCPPYVYQQQQVIMSGPSSVMLPKHLPIECGEKMITEEVSDIEELVEEEGLINSEEEEVKKLESEENCAEELKIEETNVTIALKITEMEELDKSCQTQSFENQQIENIEEEEVNYAILTNYESNLGTETETIRQENVDMDGMPLFINDFNAPVTVARVEEFDISTNDHRPRVLMNIGNTIETFTVNRDESLSRESANIRADEHMPPRGELSGQESNDTSENWVQPPPRYDNLSVSYDLIGLNSEITSENNEVNEVNVNEVFDDTPTVSGFREPPISYKCPSCNETFSCPKERKKHQGEKHKKIKKRPKKSDENNFDNVFNRFKIEPEIDNIESETKDNDKKEVLINPIICTLCDRVLADSNSLKQHQLDEHQLTVEVRNKCKTCEATFPTDAKYTEHLKIHPLECRLCGKYFFRKQNMQLHMKRHLGIKPFKCNICEKSFLTKQKHDEHKNIHTGETPIKCKLCDETFRRHSNLVQHRNRHHFNVKRKLKDYVCACGEVFHSKRKLAWHKEIHDTKPKACSFCSEKFIHMASLTRHIRRAHNKCYLPREDRNSENVECPICKNVYLRNNLDVHIRSHSGQKPFTCLICNKTFSTKWNLKLHKWTHASRMSKPFKCELCKGAFIRQSDYTAHMNSHKSVKPYTCNYCGAQFIRKYNCQRHVREHEKDKTHSCNICGKTFHRSYYLKDHIKVHSGVRPYICHICGKGSTTKSNHNKHVRIHHAREPVSAEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098696;
- 90% Identity
- iTF_01098696;
- 80% Identity
- -