Osag037329.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- Bcl11a
- Assembly
- GCA_036711965.1
- Location
- JASERS010000008.1:13186233-13187642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 2.6e+02 3.8 0.1 2 16 45 59 44 61 0.78 2 12 0.0032 0.4 12.7 1.4 1 23 122 144 122 144 0.97 3 12 1.2e-05 0.0015 20.3 4.2 2 23 149 171 149 171 0.97 4 12 0.0035 0.44 12.6 0.5 1 23 192 215 192 215 0.98 5 12 1.5e-05 0.0018 20.0 1.5 1 23 220 243 220 243 0.93 6 12 3e-05 0.0038 19.0 0.5 1 23 252 275 252 275 0.96 7 12 9.8e-05 0.012 17.5 0.2 2 23 284 304 283 304 0.97 8 12 2.7e-07 3.3e-05 25.5 1.2 1 23 310 333 310 333 0.95 9 12 2.5e-05 0.0032 19.3 0.3 1 23 339 362 339 362 0.95 10 12 0.00026 0.032 16.1 0.4 1 23 371 393 371 393 0.98 11 12 5.7e-05 0.0071 18.2 0.3 1 23 399 421 399 421 0.95 12 12 4.5e-06 0.00056 21.7 3.0 1 23 427 449 427 449 0.97
Sequence Information
- Coding Sequence
- ATGCCCAACGTTTGCCGATTATGCTTAAAGATATGCGAAGAGAGCGAGATAACGAAGATTACAAGCGAGAATTTGCTCCAAATTCGCTCAATTATCccggaaattgaTTTAAAATCAGTAAAATCACCGTTAATATGCCCAGAATGCTCCAAGTCGTTAAAAGCAGCCCACGATTTCAAATTGGTGTGCTTAGAGACAGAAAAACGTTTAGAGTTGTACATCGAAACGAACGGGATGGTTAATTTGGAGGAATTATTGAGTTTAGACTTTGAGGGCGACGATAAAAAGGAGGAAGATTATTTATTTGAGGAAACGATCGATTTAAAAGTAGAGGATGATGAGAATAACGAGGAATTAAGTAAATACGTTTGTGATATATGCGGGAAATCTTATTTAAGTTTAAAATCGAGAAATCGCCAcagaaaaaatcatttagataaACCCACGTGTAAAGTTTGTAATAAATCGTTTTATGACCGCgctaatttattaaaacatcaCCGTAGATTTCATTATTCCGAAGAGAACGAAGACACATCTGATAAATCTCACAAAAAGTTGAATCGAAAACATTACAAATGCGAATATTGCGCGAATTCCTACAAAAATCGCTCAATTCTTGAATTACACATAAAATCGGCTCATGAGcctcaaaaatatttttgtaatttttgcgAGAAACGATTCCCCACGAAATATTTATTACAACGCCACATCGATCAAATCCACTACGATAAACGCGAAGAGATTAAATACGTTTGTAAGATTTGCGATGAAGATTTCCCCTCACAACACGATTTGTGGGATCACCGTAAAGAGAATCATCCCGAATGCGAAACGCGACGTTGGACTTGCGAAATTTGCGGGGGGACTTTCTCAAAGGAAACGCTCGAAGTCCATCAACGTACCCACACGGGGGAGAGGCCTTTTAAATGCGATATTTGCGATAAAACCTTTACTCAATCGAGCTCGTTATGGACGCATAAACAACAAATACATTCCAATAAGCGCCCTTATGTGTGCGGATTTTGCCCGAGGAGTTTCCCTCTTAAAGGGAGTTTAACGAAACATATGCAAGATACTCATTTAGGTGATAAAGTCGAGAAGAAATTTAAATGTATGTATTGCCCGAAAGCTTATCGCGTTGAGAGTAAGCTGGTTTATCATGTGCGGTGGCACACGAATGAACGGAAACATAATTGTGATGTGTGTGGAAAAGCTTTCGTTGATAGGAGTTCAGTGGTGAAACATCGGGTTATTCATTCGGACGAAAAGAGGCACGTTTGTGAGGTTTGCGGGAAGGGGTTTCATCAAAAATATAATATGAAGATACATATGAAAGTGCATTCGAAATGA
- Protein Sequence
- MPNVCRLCLKICEESEITKITSENLLQIRSIIPEIDLKSVKSPLICPECSKSLKAAHDFKLVCLETEKRLELYIETNGMVNLEELLSLDFEGDDKKEEDYLFEETIDLKVEDDENNEELSKYVCDICGKSYLSLKSRNRHRKNHLDKPTCKVCNKSFYDRANLLKHHRRFHYSEENEDTSDKSHKKLNRKHYKCEYCANSYKNRSILELHIKSAHEPQKYFCNFCEKRFPTKYLLQRHIDQIHYDKREEIKYVCKICDEDFPSQHDLWDHRKENHPECETRRWTCEICGGTFSKETLEVHQRTHTGERPFKCDICDKTFTQSSSLWTHKQQIHSNKRPYVCGFCPRSFPLKGSLTKHMQDTHLGDKVEKKFKCMYCPKAYRVESKLVYHVRWHTNERKHNCDVCGKAFVDRSSVVKHRVIHSDEKRHVCEVCGKGFHQKYNMKIHMKVHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01098685;
- 90% Identity
- iTF_01098685;
- 80% Identity
- -