Osag015441.1
Basic Information
- Insect
- Onthophagus sagittarius
- Gene Symbol
- -
- Assembly
- GCA_036711965.1
- Location
- JASERS010000003.1:33505856-33521553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6e-07 5.7e-05 24.8 0.3 1 23 80 102 80 102 0.98 2 12 0.00067 0.083 14.8 2.2 2 23 108 129 107 130 0.94 3 12 3.4e-05 0.0042 18.9 0.4 2 23 148 169 147 169 0.97 4 12 0.00011 0.014 17.3 1.2 2 23 175 197 174 197 0.95 5 12 0.00047 0.058 15.3 0.6 3 23 205 226 204 226 0.97 6 12 4.1e-05 0.0051 18.6 0.8 1 23 232 255 232 255 0.98 7 12 7.1e-05 0.0088 17.9 3.6 1 23 260 282 260 282 0.98 8 12 0.0047 0.58 12.2 0.4 1 23 291 313 291 313 0.97 9 12 0.00014 0.018 16.9 1.2 1 23 320 342 320 342 0.98 10 12 0.0011 0.13 14.2 1.6 3 23 350 370 349 370 0.97 11 12 1.1e-06 0.00014 23.6 1.9 1 23 376 398 376 398 0.98 12 12 3e-05 0.0037 19.1 0.4 1 23 404 426 404 426 0.97
Sequence Information
- Coding Sequence
- ATGATTTCTGTTTGTGGCTCAATGACTCTTAAGATTATGAGAGCTGAGGGAAAATACATTTCaCTAGAGCATGAAAGTGATGATGAAAACGTAGATGATCCAGAACCGAATTTTGTTAGTGTCGGTAGCAACGATGATCAACAGCCGGGACCATCCGGATTAAACAAAATGTCCACAACCACCAGCTCCGAGATGCCgaAGATTACATTTCAACTGATACTTCATTCCGAAAACCAATACAGATGTGATATATGTGACCAAGTATTTTCTAATGCTGATAGTTTGAATAACCATAAGCAAATTCATATAGATAAAACATTACCCTGTGACCTTTGCGACAAGCAATTTAAGTACAATTACCAAGTAGTGCTTCATAAACGAAAACATCATAACAAGGTTAAAAAGGAAGTATCTCATGTAAAAAATAAAGGCCAAGTTAAACAATGTGGCTCATGTGATCAAACATTCCCTAATGCAGACAAATTGAGATTACATCAGCGTGTCCATAGAGAAAAAATAATTCCATGCGATCTTTGCAACAAGAAATTTAAATACACTTATGATTTAACAGTTCATAAGCGACAATTTCATGAGAAGGTTAAACGAGAAATATGTCCGGTATGTTTTAAACGACTTGCAACAAAAACGTCATTGCGGTTACATATAAAGCGTCTACACACCAATGAAATAGAATTTCAATGTGATCAGTGTGATAAAGGATATGCATCGGAAAAGAAATTGCGTGAACACACGAAAACTGTTCATAAGGGTGTTAGGTATTATTGTGCACATTGTAAAAAAGTTTACAGAAACGAACCGTATTTTAAACAGCACATGAAAATTCATGAACCAGACTATGTGCAGATAGATCATGTGTGCTCAGTTTGttcaaagattttaaattcGGCACTGGCACTTTATAAACATATGAGTATTCATAACGGTCCCAGTGAGAAGTACGTTTGTGAAATTTGTGGAAAGAAGTTATCTTCTACAAAATGTCTAGCTGCTCATAAACGTTTACACACGGACGAAAAACCGGAGATGTGCAGATTCTGTGATAAAACGTTTGTGAATAAGGGTAGAGTAAAAGATCATGAAAGAACTCATACAAAAGAAAAACCTTATGTATGTGAAACATGTGGTAAAGGGTTTAGTCATCGTGGTAGCCTTAAAATTCATACTAGATATCATACTGGGGAACGACCGTATATTTGCAACATTTGTAATAAGGGATTTGTTTCTACATCGGCAATGAAAACGCATTTAAGTAGTCattaa
- Protein Sequence
- MISVCGSMTLKIMRAEGKYISLEHESDDENVDDPEPNFVSVGSNDDQQPGPSGLNKMSTTTSSEMPKITFQLILHSENQYRCDICDQVFSNADSLNNHKQIHIDKTLPCDLCDKQFKYNYQVVLHKRKHHNKVKKEVSHVKNKGQVKQCGSCDQTFPNADKLRLHQRVHREKIIPCDLCNKKFKYTYDLTVHKRQFHEKVKREICPVCFKRLATKTSLRLHIKRLHTNEIEFQCDQCDKGYASEKKLREHTKTVHKGVRYYCAHCKKVYRNEPYFKQHMKIHEPDYVQIDHVCSVCSKILNSALALYKHMSIHNGPSEKYVCEICGKKLSSTKCLAAHKRLHTDEKPEMCRFCDKTFVNKGRVKDHERTHTKEKPYVCETCGKGFSHRGSLKIHTRYHTGERPYICNICNKGFVSTSAMKTHLSSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -